genome.fa.s4811.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004811.1 Hibiscus syriacus cultivar Beakdansim tig00010841_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67616

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2378--2462	6	14.2	6	77	18	70	77	0	3	18	0.91
2385--2462	29	2.6	29	81	6	93	78	0	3	17	0.90
2433--2459	4	6.8	4	100	0	54	77	0	0	22	0.76
2591--2780	37	5.2	37	83	6	210	43	8	2	45	1.46
2591--2780	75	2.6	72	84	7	240	43	8	2	45	1.46
3125--3197	3	25.0	3	76	15	73	35	0	1	63	1.04
3127--3187	22	2.8	23	80	12	83	37	0	0	62	0.96
6023--6077	13	4.3	13	81	4	76	20	45	18	16	1.86
6068--6106	15	2.6	15	100	0	78	17	35	20	25	1.95
7393--7428	18	2.0	18	88	0	54	52	0	16	30	1.44
8561--8643	24	3.5	23	78	6	85	19	15	18	46	1.83
8579--8648	12	5.8	12	73	6	61	17	14	18	50	1.79
8579--8650	24	3.0	24	87	0	108	18	13	18	50	1.79
10223--10538	144	2.2	149	86	6	443	26	11	24	37	1.90
10589--10648	30	2.0	30	93	3	104	13	8	36	41	1.74
10765--10828	27	2.4	27	100	0	128	14	9	32	43	1.77
11358--11402	18	2.6	18	86	6	67	28	26	6	37	1.82
15781--15833	19	2.8	20	75	16	51	47	1	0	50	1.12
23624--23733	24	4.6	24	70	15	77	48	15	14	21	1.81
24817--24851	18	1.9	18	88	0	52	28	17	0	54	1.43
26157--26212	13	4.3	13	93	0	94	16	23	42	17	1.88
28298--28369	24	3.0	24	85	2	101	50	18	12	19	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28302--28370	12	5.8	12	75	10	61	49	18	14	17	1.80
28307--28393	24	3.7	23	82	3	84	47	18	13	20	1.83
29696--29740	18	2.4	18	88	3	63	11	17	48	22	1.78
34221--34389	81	2.1	81	84	2	214	30	21	10	37	1.87
34768--34910	26	6.0	26	67	17	103	21	20	8	48	1.76
34735--34878	72	2.0	72	90	2	227	21	20	9	48	1.78
34790--34911	46	2.6	46	82	1	163	21	20	9	48	1.78
39429--39595	81	2.1	81	85	2	219	32	22	10	34	1.88
39954--40079	20	5.7	20	68	20	81	20	23	11	44	1.83
39942--40092	46	3.3	46	90	0	248	21	21	11	46	1.82
40837--40887	21	2.4	21	86	0	75	13	25	15	45	1.83
46163--46284	40	3.0	40	97	0	226	22	17	26	33	1.96
52476--52597	40	3.0	40	97	0	235	23	17	26	32	1.96
52702--52827	47	2.8	45	84	8	157	39	7	22	30	1.82
56454--56492	19	2.1	19	100	0	78	17	41	10	30	1.83
56953--56993	18	2.3	18	87	8	57	63	2	34	0	1.08
62637--62689	22	2.4	22	74	0	52	28	16	20	33	1.95
64014--64051	19	2.0	19	100	0	76	31	0	15	52	1.43
64181--64227	2	23.0	2	91	4	76	46	0	2	51	1.13

Tables:   1

The End!