Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004812.1 Hibiscus syriacus cultivar Beakdansim tig00010842_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68273

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18--113
33
2.9
32
84
4
120
44
19
19
15
1.86
1--117
19
6.7
19
68
18
92
44
19
20
15
1.87
28--120
33
2.8
33
86
3
134
41
18
21
18
1.90
113--175
19
3.3
19
84
4
81
15
19
20
44
1.87
122--175
20
2.8
19
91
5
90
12
20
20
46
1.83
282--318
14
2.6
14
82
0
56
43
24
0
32
1.55
1662--1728
21
3.2
21
68
4
55
19
20
35
23
1.95
1662--1784
42
2.9
41
79
7
113
22
18
36
21
1.95
3812--3899
33
2.6
33
92
1
140
38
25
25
11
1.89
3787--3946
19
8.8
19
74
15
124
45
21
21
12
1.84
3952--3988
19
1.9
19
94
0
65
2
16
24
56
1.53
4541--4593
20
2.7
20
93
0
88
26
20
28
24
1.99
4602--4655
20
2.7
20
97
0
99
25
18
24
31
1.97
4542--4658
61
1.9
61
85
0
162
23
17
24
33
1.97
4542--4676
61
2.2
61
81
2
155
22
20
24
32
1.98
5806--5830
7
3.6
7
100
0
50
12
0
12
76
1.04
6951--6982
13
2.4
14
85
15
50
78
0
0
21
0.76
8298--8323
2
13.0
2
100
0
52
50
0
0
50
1.00
9054--9108
17
3.4
17
75
9
53
72
3
12
10
1.24
9033--9140
32
3.3
32
78
8
121
68
2
10
18
1.30
9159--9210
24
2.2
24
83
10
63
73
1
9
15
1.18
9150--9280
29
4.6
28
71
16
83
72
0
6
19
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9083--9282
81
2.5
77
80
14
189
71
1
7
20
1.17
9221--9282
24
2.7
24
83
14
85
75
0
4
19
0.97
9234--9282
15
3.3
14
83
11
62
79
0
4
16
0.88
9231--9307
39
2.0
40
82
7
95
76
5
3
14
1.10
9149--9298
81
1.8
81
81
7
187
71
3
6
19
1.21
11981--12049
28
2.5
26
79
4
66
44
10
5
39
1.62
12004--12264
38
7.1
36
85
9
332
45
4
4
44
1.44
12004--12271
74
3.6
72
84
8
319
46
5
4
44
1.45
12258--12286
14
2.1
14
93
6
51
55
3
0
41
1.17
21372--21435
23
2.7
23
76
11
76
45
0
0
54
0.99
21748--21785
9
4.2
9
86
0
58
73
0
0
26
0.83
22853--22888
16
2.2
16
90
0
54
47
8
0
44
1.33
23055--23085
2
15.5
2
100
0
62
48
0
0
51
1.00
29132--29227
44
2.2
45
86
1
131
16
16
39
27
1.90
30402--30459
27
2.1
27
100
0
116
41
3
3
51
1.35
30404--30450
15
3.3
15
71
17
55
40
4
4
51
1.41
46570--47152
2
293.0
2
66
19
240
47
4
4
44
1.41
47128--47482
131
2.7
137
75
15
316
51
3
9
35
1.52
46886--47410
217
2.5
210
77
13
493
50
3
7
38
1.47
47207--47404
103
1.9
101
84
7
263
50
4
9
35
1.56
47436--47493
8
7.8
8
75
14
61
53
1
10
34
1.45
47434--47493
22
2.7
22
92
0
93
53
1
10
35
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49472--49533
29
2.3
27
86
8
81
25
14
12
46
1.80
54399--54598
109
1.8
109
86
2
294
38
11
6
44
1.65
54935--54985
25
2.0
25
88
0
75
29
15
21
33
1.94
55183--55593
111
3.9
108
75
11
344
31
2
12
53
1.50
55306--55490
102
1.8
102
79
2
219
31
1
12
54
1.48
55499--55736
96
2.6
98
81
14
265
34
4
10
51
1.55
56913--56950
19
2.0
19
89
0
58
42
0
0
57
0.98
60047--60082
18
1.9
19
88
5
56
75
2
11
11
1.16

Tables:   1

The End!