genome.fa.s4816.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004816.1 Hibiscus syriacus cultivar Beakdansim tig00010851_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48390

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1893--1982	44	2.0	45	91	2	146	33	17	21	27	1.96
3389--3537	42	3.5	44	79	9	155	25	16	17	40	1.89
4475--4837	131	2.8	132	83	4	444	33	18	15	31	1.92
4409--4900	133	3.7	132	79	6	494	33	19	15	32	1.93
6053--6303	107	2.3	107	79	8	267	20	16	17	45	1.86
7171--7207	13	3.0	13	80	15	51	10	0	13	75	1.04
8651--8696	23	2.0	22	91	4	65	28	10	26	34	1.90
8656--8701	23	2.0	23	100	0	92	26	8	26	39	1.85
11291--11639	178	2.0	178	95	0	635	28	20	19	32	1.97
18637--18663	14	1.9	14	100	0	54	40	0	0	59	0.98
21640--21751	37	3.0	37	89	2	172	41	15	13	29	1.85
22244--22283	2	20.0	2	100	0	80	50	0	0	50	1.00
22244--22321	12	6.9	12	80	14	76	41	1	0	57	1.07
22267--22389	41	3.0	40	79	14	144	29	3	0	66	1.13
22267--22388	39	3.0	40	81	12	144	29	3	0	66	1.13
22305--22378	33	2.3	32	86	11	98	28	4	1	66	1.18
22305--22378	31	2.3	33	84	11	91	28	4	1	66	1.18
22277--22409	40	3.3	39	69	19	103	26	3	1	69	1.12
22436--22482	2	23.5	2	100	0	94	48	0	0	51	1.00
25608--25663	13	4.4	13	82	15	64	76	5	16	1	1.05
25613--25650	11	3.2	12	85	14	53	78	5	15	0	0.91
25615--25669	12	4.4	12	79	20	51	78	3	14	3	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32322--32350	2	14.5	2	100	0	58	51	0	0	48	1.00
32735--32842	37	2.9	37	94	0	162	31	12	14	40	1.84
33394--33568	83	2.1	83	85	0	242	25	19	22	33	1.97
33605--33759	34	4.4	35	94	3	251	32	8	18	41	1.80
33605--33759	69	2.2	70	90	5	251	32	8	18	41	1.80
33745--33907	37	4.6	37	74	20	159	37	14	21	26	1.92
33813--33907	36	2.6	37	91	5	149	37	14	21	26	1.92
33972--34043	37	1.9	37	94	0	126	44	13	16	25	1.85
33945--34189	102	2.4	102	87	1	339	38	12	18	31	1.87
34074--34160	37	2.4	37	84	1	104	39	14	20	25	1.91
34072--34290	87	2.4	89	75	10	248	37	12	18	31	1.88
34567--34841	106	2.6	106	90	0	424	21	18	25	35	1.96
35437--35527	33	2.8	33	89	1	139	39	18	12	29	1.87
36465--36602	69	2.0	69	87	2	197	26	15	21	36	1.93
36674--36723	13	3.8	14	84	12	70	4	16	4	76	1.10
36674--36725	27	2.0	26	92	7	88	3	15	3	76	1.07
39915--39958	18	2.4	19	84	3	54	84	2	6	6	0.86
40554--40665	37	3.0	37	89	2	172	32	13	14	40	1.84
42151--42209	19	3.3	17	72	11	55	27	15	6	50	1.68
42151--42185	17	2.0	18	88	5	54	25	11	8	54	1.64
45313--45376	3	21.0	3	90	3	101	64	1	1	32	1.13
45551--45729	74	2.4	74	89	0	286	30	22	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45680--46127	45	10.0	45	91	1	675	34	20	22	23	1.97
45690--46127	89	4.9	89	91	1	653	34	19	22	23	1.96
45680--46127	134	3.3	135	90	2	686	34	20	22	23	1.97
46789--46843	20	2.7	20	86	8	76	34	14	18	32	1.91

Tables:   1

The End!