Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004817.1 Hibiscus syriacus cultivar Beakdansim tig00010853_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37462

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3456--3507
27
1.9
27
84
7
70
19
25
13
42
1.87
11445--11725
48
5.9
48
87
0
339
20
28
23
28
1.99
12476--12824
37
9.6
36
76
17
273
46
3
5
45
1.41
12439--12830
74
5.4
74
79
12
386
44
3
6
45
1.44
12578--12717
64
2.2
63
87
6
194
44
2
6
46
1.44
12546--12755
101
2.1
101
89
2
314
46
2
4
46
1.39
12614--12676
27
2.4
27
86
2
92
44
0
6
49
1.28
12515--12789
138
2.0
139
88
3
412
46
2
5
45
1.40
12825--12867
3
14.3
3
85
9
61
30
2
0
67
1.03
12829--12886
18
3.5
17
86
6
59
25
3
0
70
1.03
15876--15924
21
2.3
21
82
6
64
59
10
20
10
1.59
17512--17712
99
2.0
99
90
1
314
35
15
16
31
1.91
18883--19550
84
8.0
84
80
2
698
32
24
17
24
1.97
18900--19562
167
4.0
167
85
1
824
32
24
17
25
1.97
19563--19756
84
2.3
84
84
5
241
31
24
17
26
1.97
20439--20758
37
9.1
34
81
15
336
45
4
5
44
1.46
20553--20620
27
2.5
28
86
9
97
41
2
5
50
1.42
20517--20716
64
3.1
64
85
8
235
44
3
6
46
1.45
20491--20689
101
2.0
97
89
5
301
44
3
5
46
1.43
20562--20632
28
2.6
27
84
6
81
45
2
5
46
1.41
20438--20758
173
1.9
170
85
8
454
45
4
5
44
1.46
20760--20807
3
16.3
3
79
12
55
25
4
0
70
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20763--20826
16
4.2
15
82
11
60
21
4
0
73
1.01
22012--22089
2
39.5
2
97
2
149
50
0
0
50
1.00
22118--22212
5
17.4
5
78
9
73
21
3
4
71
1.17
22118--22212
18
5.8
15
73
13
73
21
3
4
71
1.17
22182--22215
3
11.3
3
87
0
50
26
2
2
67
1.19
22405--22440
6
5.7
6
90
9
54
30
0
0
69
0.89
22405--22440
13
2.8
12
91
8
54
30
0
0
69
0.89
23706--23733
2
14.0
2
100
0
56
50
0
0
50
1.00
24381--24405
3
8.3
3
100
0
50
32
0
0
68
0.90
27269--27315
21
2.2
21
80
0
58
36
19
12
31
1.89
29053--29092
21
1.9
20
90
10
62
20
0
2
77
0.88
34392--34446
3
18.0
3
88
3
65
40
0
0
60
0.97
36463--36514
14
3.4
14
76
23
52
21
1
3
73
1.10

Tables:   1

The End!