Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004818.1 Hibiscus syriacus cultivar Beakdansim tig00010860_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49892

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
320--388
21
3.3
21
95
0
120
33
11
27
27
1.91
253--672
95
4.5
95
83
5
507
40
13
22
23
1.90
253--672
47
9.0
47
81
6
487
40
13
22
23
1.90
594--692
20
4.6
20
74
16
90
38
11
28
22
1.88
1164--1238
29
2.6
29
91
0
114
44
10
24
21
1.84
4663--4742
39
2.1
39
92
0
133
17
31
18
32
1.94
7927--7969
17
2.5
17
85
11
52
58
0
0
41
0.98
8348--8997
347
1.9
344
81
4
797
33
13
19
33
1.91
11872--11906
16
2.1
17
94
5
63
42
0
0
57
0.99
15629--15657
3
9.7
3
100
0
58
65
0
0
34
0.93
17088--17207
3
40.7
3
83
11
142
67
0
0
32
0.91
17086--17207
25
5.1
25
78
18
136
67
0
0
32
0.91
17434--17949
122
4.3
122
86
5
659
26
20
13
39
1.90
17758--18044
113
2.5
113
86
2
389
27
20
12
38
1.89
18018--18082
19
3.4
19
91
2
103
10
20
12
56
1.65
18301--18385
22
3.9
22
92
0
134
34
14
16
35
1.89
19715--19770
17
3.4
17
73
24
57
10
19
0
69
1.17
27090--27121
15
2.1
15
94
0
55
46
9
18
25
1.79
30425--30482
28
2.2
26
87
6
80
62
0
5
32
1.18
32788--32866
3
26.7
3
80
12
92
65
0
1
32
1.00
32787--32866
22
3.7
23
82
14
107
66
0
1
32
1.00
33337--33384
21
2.3
21
85
0
60
31
27
18
22
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33347--33386
21
1.9
21
94
0
71
30
25
20
25
1.99
34093--34207
21
5.4
21
87
4
176
40
17
20
22
1.92
34093--34207
44
2.7
42
85
5
158
40
17
20
22
1.92
34093--34217
65
1.9
65
96
0
232
39
18
20
22
1.93
34199--34253
21
2.6
21
94
0
92
30
29
21
18
1.97
34093--34247
65
2.4
63
88
6
197
37
20
20
21
1.95
38398--38436
19
2.1
19
90
4
62
53
0
7
38
1.30
38512--38544
17
1.9
17
93
0
57
33
0
0
66
0.92
39967--40013
24
2.0
22
92
8
76
36
2
4
57
1.30
46773--46823
18
2.9
18
78
16
54
56
0
1
41
1.10
46763--46809
17
2.5
19
73
16
53
61
0
0
38
0.96
46841--46887
24
2.0
24
91
4
69
53
0
0
46
1.00
46814--46970
61
2.5
63
87
9
234
56
1
0
41
1.10
46883--46944
24
2.5
25
79
12
74
53
1
0
45
1.10
48245--48277
15
2.1
17
88
11
52
42
6
0
51
1.26

Tables:   1

The End!