genome.fa.s4819.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004819.1 Hibiscus syriacus cultivar Beakdansim tig00010861_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83788

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11366--11423	11	5.3	11	80	11	57	15	8	3	72	1.23
11365--11413	23	2.2	22	88	3	71	18	8	4	69	1.30
11365--11423	23	2.6	22	84	10	68	16	8	3	71	1.25
13914--13990	29	2.7	29	93	0	127	27	7	24	40	1.82
13913--14010	29	3.4	28	78	5	88	29	7	22	40	1.80
14942--15107	42	4.0	41	92	3	260	19	24	24	31	1.98
16776--16857	41	2.0	42	83	7	105	56	3	15	24	1.56
17737--17876	73	1.9	73	91	0	226	27	3	14	55	1.56
23484--23539	21	2.5	22	77	13	62	7	17	3	71	1.23
24261--24409	44	3.4	44	80	8	169	31	16	21	30	1.96
25938--26535	54	11.1	53	84	5	671	41	19	9	28	1.83
35588--35615	8	3.5	8	100	0	56	10	0	0	89	0.49
36313--36381	35	2.0	35	91	0	111	30	0	26	43	1.55
37738--37861	3	39.0	3	76	13	115	34	1	4	59	1.26
37734--37889	13	12.2	12	74	14	107	37	1	3	57	1.25
37738--37861	16	7.8	15	77	12	115	34	1	4	59	1.26
39424--39501	2	39.0	2	75	16	56	42	6	0	51	1.27
43918--43977	17	3.5	17	88	0	84	16	21	33	28	1.95
44176--44206	16	1.9	16	93	0	53	58	0	6	35	1.24
45744--45788	2	23.5	2	82	8	58	48	0	2	48	1.13
48761--48818	30	1.9	30	82	6	73	43	0	22	34	1.54
50545--50606	17	3.6	17	74	10	54	54	4	24	16	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51889--51944	20	2.8	20	81	8	69	41	16	14	28	1.87
54766--54857	42	2.2	42	86	3	123	20	18	38	22	1.94
54766--54857	21	4.4	21	75	4	78	20	18	38	22	1.94
54796--54877	42	2.0	42	82	0	101	23	15	40	20	1.91
55379--55427	20	2.5	20	89	0	80	34	26	24	14	1.94
55419--55494	33	2.3	34	90	2	118	44	19	21	14	1.86
55461--55498	20	1.9	20	94	0	67	47	18	21	13	1.82
55494--55537	19	2.3	19	88	0	61	13	15	22	47	1.81
55564--55611	20	2.4	20	85	0	69	12	18	25	43	1.85
55603--55640	20	1.9	20	100	0	76	15	10	23	50	1.75
59524--59575	6	8.7	6	97	0	77	57	0	0	42	0.98
59524--59582	6	10.0	6	96	1	66	57	0	0	42	0.98
60068--60116	8	6.1	8	76	9	55	34	0	0	65	0.93
60068--60105	17	2.3	17	86	4	51	34	0	0	65	0.93
60752--60900	60	2.5	60	80	2	156	45	3	18	32	1.66
61752--61802	22	2.3	23	86	10	70	31	31	13	23	1.93
67211--67257	16	2.9	16	90	0	76	48	23	23	4	1.68
67214--67264	16	3.2	16	88	0	75	49	23	19	7	1.74
69053--69176	20	6.2	20	85	5	153	33	16	16	33	1.92
69053--69176	40	3.1	40	88	0	176	33	16	16	33	1.92
69063--69195	40	3.3	39	83	6	142	30	15	18	35	1.92
69064--69181	60	2.0	60	89	3	184	31	16	16	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69276--69544	35	7.7	34	79	7	272	36	17	22	23	1.95
69276--69544	105	2.6	105	84	5	348	36	17	22	23	1.95
69724--69774	12	4.5	12	80	16	56	37	5	0	56	1.23
70773--70799	13	2.1	13	100	0	54	14	7	14	62	1.51
71119--71180	30	2.1	30	100	0	124	37	3	6	53	1.43
73689--74086	163	2.5	155	82	8	493	28	18	7	45	1.75
74930--74987	25	2.3	25	90	0	89	27	22	31	18	1.97
76573--76662	19	4.4	19	74	16	81	37	5	26	30	1.79
76956--76996	5	7.6	5	97	2	55	0	19	53	26	1.45
76959--77000	6	7.5	6	97	2	63	0	16	54	28	1.42
77086--77126	21	2.0	21	90	0	64	31	26	21	19	1.97
77102--77208	53	2.0	53	98	0	205	34	21	22	21	1.97
77155--77299	40	3.6	40	93	0	245	34	22	21	22	1.97
77155--77320	21	8.2	21	74	7	146	33	21	21	22	1.97
77155--77393	80	3.0	79	85	6	267	35	20	21	23	1.96
77296--77363	35	1.9	35	84	0	91	36	14	22	26	1.93
77171--77374	19	10.5	19	72	15	139	35	20	21	23	1.96
77190--77393	96	2.1	99	86	4	279	35	21	21	22	1.96
77107--77384	19	14.5	19	70	15	126	34	20	21	22	1.96
78140--78182	3	14.3	3	95	0	50	23	0	9	67	1.19
78175--78213	10	3.6	10	86	13	51	23	2	0	74	0.94

Tables:   1

The End!