Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01000482.1 Hibiscus syriacus cultivar Beakdansim tig00000916_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2886609
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


File 16 of 16

Found at i:2885379 original size:21 final size:21

Alignment explanation


    Indices: 2885353--2885405  Score: 97
    Period size: 21  Copynumber: 2.5  Consensus size: 21

    2885343 CCCTCAAGTG

                       *         
    2885353 TCTTCGACTCTCTCAAGTTTC
          1 TCTTCGACTCTATCAAGTTTC

                                 
    2885374 TCTTCGACTCTATCAAGTTTC
          1 TCTTCGACTCTATCAAGTTTC

                       
    2885395 TCTTCGACTCT
          1 TCTTCGACTCT

    2885406 TGATTGTCTT


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  21   31  1.00

ACGTcount: A:0.15, C:0.32, G:0.09, T:0.43


Consensus pattern (21 bp):   
TCTTCGACTCTATCAAGTTTC

Done.