genome.fa.s4823.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004823.1 Hibiscus syriacus cultivar Beakdansim tig00010868_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139299

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404--446	17	2.6	16	78	7	50	39	25	0	34	1.56
9157--9205	19	2.7	17	84	9	53	26	20	28	24	1.99
9178--9315	64	2.2	64	84	7	174	28	19	22	28	1.98
9242--9346	46	2.3	44	84	11	124	28	19	20	32	1.96
9630--9709	37	2.1	38	84	6	101	50	7	6	36	1.56
23449--23482	11	3.3	11	88	12	54	38	0	0	61	0.96
23453--23495	20	2.2	20	83	8	52	39	4	0	55	1.20
24168--24399	20	11.5	20	76	12	197	37	23	18	19	1.94
24168--24399	40	5.8	40	83	7	236	37	23	18	19	1.94
24168--24399	81	2.9	80	86	5	263	37	23	18	19	1.94
24916--25028	20	6.1	19	74	13	83	11	22	20	46	1.82
28462--28497	14	2.6	14	95	0	63	33	0	22	44	1.53
28604--28701	19	5.8	17	69	22	64	43	19	24	12	1.85
28604--28697	33	2.8	33	98	0	179	43	19	24	12	1.85
28697--28859	33	4.7	33	81	9	164	14	20	22	42	1.88
28728--28826	19	5.4	19	75	13	109	15	21	19	44	1.86
28759--28861	20	5.6	19	73	14	81	15	22	22	39	1.91
28726--28861	72	1.9	73	90	1	220	15	22	21	41	1.90
31220--31287	24	2.8	24	81	0	73	41	19	14	25	1.89
32127--32365	20	11.9	19	72	12	140	20	18	23	37	1.94
32133--32403	40	6.8	40	82	8	266	19	18	23	38	1.93
32135--32327	60	3.2	59	81	7	221	19	18	23	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32354--32403	20	2.5	20	87	6	66	16	18	22	44	1.87
32397--32449	21	2.5	21	73	11	54	24	18	24	32	1.97
32391--32485	20	4.7	20	69	18	61	21	18	27	32	1.97
36289--36313	7	3.6	7	100	0	50	40	0	44	16	1.47
37719--38007	42	6.9	41	90	4	443	31	25	24	19	1.98
37719--38007	84	3.4	84	96	1	517	31	25	24	19	1.98
38862--39016	29	5.3	30	74	10	108	40	20	6	32	1.78
38884--39046	87	1.9	88	83	3	213	42	22	6	28	1.79
39064--39118	13	4.5	13	71	17	55	12	20	49	18	1.79
42697--42740	2	22.0	2	100	0	88	50	0	0	50	1.00
44396--44455	30	2.0	30	93	0	102	33	16	8	41	1.78
48903--49037	67	2.0	67	98	0	261	51	14	11	22	1.73
52073--52154	21	3.9	22	71	18	75	43	4	21	29	1.73
54807--54875	5	13.2	5	73	19	52	26	4	1	68	1.17
54825--54872	16	2.9	16	79	14	53	27	2	2	68	1.11
61983--62039	21	2.8	20	79	15	71	47	3	19	29	1.66
62212--62568	42	8.6	42	84	5	442	27	22	18	31	1.97
62163--62568	83	4.9	83	84	5	448	28	21	18	31	1.97
62164--62568	125	3.3	124	87	3	548	28	21	18	31	1.97
64803--64899	46	2.1	46	98	0	185	26	15	9	48	1.75
66158--66216	21	2.8	21	81	0	64	20	6	16	55	1.63
66369--66550	43	4.3	43	85	4	242	26	21	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66369--66525	85	1.8	86	89	4	246	28	22	22	25	1.99
66369--66550	85	2.1	86	85	3	242	26	21	22	28	1.99
66576--66605	15	2.0	15	93	0	51	16	26	26	30	1.97
69367--69414	16	2.9	16	79	14	53	27	2	2	68	1.11
83216--83257	21	2.0	21	86	9	59	54	2	0	42	1.13
94047--94193	71	2.1	71	79	5	154	42	13	10	33	1.78
101673--101707	14	2.5	14	90	0	52	42	2	2	51	1.31
102702--102763	31	2.0	31	96	0	115	25	30	12	30	1.93
108727--108774	23	2.0	24	92	4	80	41	8	25	25	1.83
118233--118266	16	2.2	15	89	5	50	76	0	0	23	0.79
122794--122850	30	1.9	30	85	0	78	68	5	0	26	1.11
128535--128695	64	2.5	63	84	6	191	35	18	19	26	1.95
129370--129428	30	2.0	30	82	0	73	18	20	23	37	1.94
132784--132907	64	1.9	65	88	4	189	37	18	18	25	1.94
134535--134570	18	2.0	18	94	0	63	55	25	2	16	1.55
136467--136547	21	3.8	21	96	1	144	29	23	27	19	1.98
136452--136572	42	2.9	41	82	4	143	28	21	28	20	1.98
136854--136926	21	3.5	21	90	0	92	34	27	17	20	1.95
136868--136928	21	2.9	21	97	0	113	37	26	13	22	1.91
136867--136984	21	5.6	21	78	7	55	33	32	12	22	1.91
138686--138737	19	2.8	18	85	8	77	48	23	17	11	1.79

Tables:   1

The End!