Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004824.1 Hibiscus syriacus cultivar Beakdansim tig00010869_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65246

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12154--12210
25
2.3
25
81
0
69
22
7
12
57
1.58
12992--13054
18
3.5
18
89
4
92
38
12
26
22
1.90
18143--18203
21
3.2
21
65
29
64
36
4
16
42
1.70
18135--18253
35
3.3
36
89
5
179
34
5
16
43
1.70
21916--21976
21
3.2
21
65
29
64
31
4
21
42
1.74
21915--22023
35
3.1
35
93
2
175
31
4
20
44
1.72
27863--27944
29
2.8
29
94
1
137
32
14
9
42
1.79
28289--28318
10
3.0
10
95
0
51
20
56
20
3
1.56
32519--32600
29
2.8
29
94
1
137
32
14
9
42
1.79
33766--33790
2
12.5
2
100
0
50
52
0
0
48
1.00
35080--35161
41
2.0
42
87
2
121
25
15
24
34
1.95
35652--35702
26
2.0
26
81
7
61
35
21
5
37
1.78
42019--42046
12
2.3
12
100
0
56
14
17
7
60
1.55
42821--42879
29
2.0
29
100
0
118
23
13
13
49
1.78
47506--47564
29
2.0
29
100
0
118
23
13
13
49
1.78
47834--47858
3
8.3
3
100
0
50
32
0
0
68
0.90
49635--49813
91
2.0
89
88
2
268
29
7
13
50
1.68
49800--49857
21
2.5
24
78
10
77
44
1
5
48
1.35
49826--49890
28
2.3
30
82
17
86
41
1
3
53
1.25
49796--49891
28
3.7
26
75
20
85
43
2
4
50
1.33
51117--51174
27
2.1
28
87
6
84
25
5
3
65
1.29
51144--51181
18
2.2
17
86
9
51
26
2
2
68
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51910--51964
25
2.2
25
100
0
110
20
27
18
34
1.95
59829--59861
15
2.2
15
89
10
50
57
0
24
18
1.40
60686--60735
21
2.4
21
89
0
73
36
22
10
32
1.87
62309--62338
2
15.0
2
100
0
60
50
0
0
50
1.00
63382--63434
3
17.7
3
100
0
106
32
0
0
67
0.91

Tables:   1

The End!