Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004825.1 Hibiscus syriacus cultivar Beakdansim tig00010870_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85672

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2208--2276
23
3.0
23
80
0
84
21
26
24
27
1.99
3048--3844
209
3.8
208
86
6
1091
29
11
8
50
1.68
11352--11414
24
2.6
24
87
5
83
11
11
19
58
1.61
12394--12468
10
7.7
10
71
21
61
10
12
21
56
1.66
12400--12464
16
4.1
16
91
0
112
9
12
21
56
1.63
12534--12566
16
2.1
16
100
0
66
6
12
24
57
1.57
12993--13022
9
3.3
9
100
0
60
43
13
0
43
1.43
17631--17657
1
27.0
1
100
0
54
0
0
100
0
0.00
24456--24498
16
2.7
16
85
0
50
58
13
13
13
1.64
42965--43052
42
2.1
42
91
4
142
46
11
21
20
1.82
48320--48353
2
17.0
2
100
0
68
50
0
0
50
1.00
49975--50019
21
2.1
22
83
4
56
66
6
11
15
1.42
54803--54842
20
2.1
19
90
4
62
60
2
0
37
1.11
56791--56835
13
3.4
13
80
17
56
46
0
8
44
1.34
56796--56847
25
2.0
27
85
7
72
51
0
9
38
1.35
65223--65270
24
2.0
25
91
4
80
41
10
0
47
1.37
66025--66059
17
2.1
17
89
10
54
71
0
11
17
1.14
67316--67375
10
5.7
10
75
11
57
71
3
3
21
1.15
67899--67962
11
6.1
10
81
15
67
28
1
3
67
1.15
67899--67962
21
3.0
20
82
13
67
28
1
3
67
1.15
67894--67963
32
2.2
32
87
7
97
28
2
2
65
1.21
74745--74790
19
2.3
21
82
10
62
56
0
2
41
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74772--74818
24
2.0
24
87
4
69
51
0
0
48
1.00
74772--74818
23
2.0
23
84
12
60
51
0
0
48
1.00
75043--75085
21
2.0
21
90
0
68
39
9
23
27
1.85
75064--75108
15
3.1
15
77
6
56
44
6
17
31
1.75
75118--75151
14
2.4
14
95
0
59
38
11
14
35
1.83
75299--75350
27
1.9
27
85
14
72
48
0
0
51
1.00
75453--75515
23
2.7
23
80
5
63
46
1
1
50
1.20
75500--75596
27
3.5
27
76
16
92
50
2
0
47
1.12
75500--75653
27
5.9
27
68
21
80
50
1
0
48
1.14
75572--75641
16
4.3
17
71
20
60
45
1
1
51
1.18
75866--75960
42
2.3
43
90
3
142
54
16
11
16
1.70
81280--81447
92
1.9
87
83
13
216
25
13
19
42
1.86

Tables:   1

The End!