genome.fa.s4826.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004826.1 Hibiscus syriacus cultivar Beakdansim tig00010871_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58689

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2951--3029	12	6.6	12	89	5	61	46	2	0	50	1.14
2973--3031	2	30.0	2	96	3	111	50	0	0	49	1.00
12595--12627	12	2.8	12	95	0	57	30	0	18	51	1.46
14536--14613	40	2.0	38	85	5	102	16	24	20	38	1.93
17816--17872	30	1.9	30	85	7	80	56	8	5	29	1.52
19241--19498	75	3.4	75	84	1	293	41	8	13	36	1.76
19398--19596	98	2.0	98	87	0	281	41	10	12	35	1.78
20229--20513	105	2.7	106	85	3	356	35	13	12	38	1.82
24539--24671	70	1.9	71	83	10	173	49	9	12	28	1.71
24930--25088	76	2.1	76	89	2	239	43	11	12	32	1.79
25006--25248	100	2.4	100	84	2	310	41	13	12	31	1.83
25268--25537	109	2.5	108	86	5	366	35	12	10	40	1.78
26729--26777	17	2.8	18	78	12	57	20	8	2	69	1.24
26766--26810	19	2.4	18	85	7	63	31	0	0	68	0.89
26766--26824	19	3.2	19	79	13	61	30	1	0	67	1.00
26770--26823	28	1.9	28	85	7	74	33	1	0	64	1.04
30420--30453	2	17.0	2	87	0	50	50	2	2	44	1.32
30878--31247	30	12.3	30	98	0	695	30	23	22	23	1.99
35660--35998	30	11.3	30	98	0	635	29	24	23	23	1.99
36501--36548	25	2.0	25	83	4	62	37	16	6	39	1.74
36877--36921	21	2.1	21	87	0	63	15	24	28	31	1.96
37702--37759	26	2.2	27	84	9	75	46	0	10	43	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38036--38099	28	2.3	26	80	15	74	48	1	21	28	1.59
38040--38095	28	1.9	28	85	7	76	46	1	21	30	1.62
38055--38108	28	1.9	27	82	14	65	44	0	22	33	1.53
38278--38470	32	6.1	32	90	1	284	31	16	18	33	1.93
42155--42200	24	1.9	24	86	8	67	39	6	8	45	1.61
42501--42538	2	19.0	2	100	0	76	0	0	50	50	1.00
43063--43324	32	8.3	32	90	1	386	30	16	18	34	1.94
44147--45805	4	416.8	4	96	1	3043	49	24	0	25	1.55
46154--46248	18	5.0	19	76	12	97	28	27	21	23	1.99
46154--46248	38	2.5	38	83	6	113	28	27	21	23	1.99
53717--53761	23	2.0	23	90	0	72	17	8	22	51	1.73
57142--57272	33	4.0	33	90	0	181	12	35	18	32	1.89

Tables:   1

The End!