genome.fa.s4828.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004828.1 Hibiscus syriacus cultivar Beakdansim tig00010874_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74271

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5756--6073	38	8.7	38	81	9	358	46	1	7	44	1.42
6093--6146	17	3.1	17	80	15	65	33	0	1	64	1.04
6089--6145	4	13.8	4	80	12	62	31	0	1	66	1.02
6086--6145	28	2.1	29	90	3	95	31	0	1	66	1.01
6179--6219	18	2.3	18	87	4	57	26	29	26	17	1.97
18949--18998	24	2.1	24	88	7	75	58	14	2	26	1.47
24523--24572	24	2.1	24	88	7	75	58	14	2	26	1.47
26645--27007	39	9.8	37	77	13	347	44	2	6	46	1.42
26662--26965	74	3.9	80	83	9	289	45	2	5	46	1.42
27027--27065	4	9.8	4	83	10	53	28	0	2	69	1.02
27027--27063	15	2.6	14	91	8	58	27	0	2	70	1.01
28660--28716	20	2.9	20	82	12	73	35	8	26	29	1.87
28706--28738	16	2.1	16	100	0	66	39	18	18	24	1.92
29238--29758	59	8.8	59	89	2	670	32	13	21	32	1.92
30720--30769	25	2.0	25	100	0	100	28	20	28	24	1.99
35757--35816	21	2.9	21	87	2	68	36	10	25	28	1.88
35764--35837	21	3.5	21	92	0	103	33	12	25	28	1.92
35825--36049	95	2.4	94	80	8	235	30	14	25	30	1.95
35996--36047	20	2.5	21	81	15	63	30	13	25	30	1.94
36363--37010	59	11.0	59	92	2	935	33	13	21	31	1.93
36363--37010	294	2.2	295	88	2	946	33	13	21	31	1.93
40526--41004	251	1.9	248	95	0	751	24	16	20	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43914--43948	18	1.9	17	88	11	52	17	0	11	71	1.14
45514--45539	12	2.2	12	100	0	52	46	15	23	15	1.83
55000--55043	21	2.2	20	84	12	54	22	13	11	52	1.72
60796--60891	35	2.7	35	82	3	104	40	30	2	27	1.68
61045--61336	148	2.0	147	92	0	485	35	6	8	48	1.61
66379--66452	31	2.4	31	88	0	103	24	25	14	35	1.94
68237--68272	18	1.9	19	88	5	56	38	0	33	27	1.57
68396--68463	31	2.2	31	89	5	102	35	14	27	22	1.93
69084--69122	17	2.4	17	95	4	71	43	0	5	51	1.24

Tables:   1

The End!