genome.fa.s483.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000483.1 Hibiscus syriacus cultivar Beakdansim tig00000920_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65171

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2178--2220	12	3.5	12	78	6	50	83	2	9	4	0.87
2281--2418	69	2.0	69	90	2	215	36	22	15	26	1.93
3345--3457	32	3.5	32	80	3	111	30	11	19	38	1.87
4078--4299	105	2.1	105	82	1	266	35	24	19	21	1.96
4569--4654	37	2.4	37	86	2	111	25	18	15	40	1.89
4517--4884	102	3.6	102	89	1	578	31	17	12	38	1.87
4785--4857	37	2.0	37	91	0	119	26	17	13	42	1.87
4517--4884	202	1.8	202	92	0	628	31	17	12	38	1.87
4922--5024	36	2.8	37	91	2	181	27	22	14	35	1.93
4935--5121	102	1.8	102	82	6	245	27	20	13	38	1.90
4922--5155	36	6.6	36	74	17	159	26	20	14	38	1.91
5142--5223	37	2.3	37	85	8	109	40	21	7	30	1.81
6344--6389	21	2.0	23	84	12	60	21	8	0	69	1.15
6386--6462	16	4.8	17	89	7	101	42	1	0	55	1.07
6402--6462	2	31.5	2	91	6	99	45	1	0	52	1.10
6553--6610	17	3.5	17	75	15	50	24	3	0	72	1.00
6815--6840	11	2.4	11	100	0	52	15	0	0	84	0.62
6796--6838	19	2.2	20	80	19	56	18	2	2	76	1.00
6821--6881	26	2.3	28	75	13	67	13	4	6	75	1.16
10911--11044	70	1.9	70	95	0	241	26	13	12	47	1.79
17662--17702	21	1.9	22	90	5	66	14	21	17	46	1.84
32651--32701	19	2.5	20	81	9	59	47	0	1	50	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36621--36708	24	3.7	24	92	0	140	22	20	21	35	1.96
41362--41442	24	3.4	24	89	0	126	22	18	22	37	1.95
41524--41623	35	2.9	35	95	0	182	10	33	28	29	1.89
45385--45444	23	2.6	22	78	21	61	25	20	5	50	1.68
46703--46750	20	2.4	19	80	10	60	33	27	12	27	1.92
46766--46817	21	2.5	21	87	0	77	21	25	19	34	1.96
46807--46889	19	4.2	20	78	6	105	36	20	21	21	1.96
46807--46919	60	1.9	60	85	1	156	35	20	20	23	1.96
48021--48056	14	2.5	14	90	4	54	58	22	13	5	1.56
50266--50354	20	4.4	20	91	2	144	34	25	22	16	1.95
50346--50399	14	3.5	14	73	22	54	44	20	24	11	1.83
50326--50421	33	2.8	33	92	3	147	42	20	23	12	1.86
50359--50425	20	3.7	19	72	22	72	46	19	22	11	1.82
51948--52040	42	2.2	42	80	3	107	22	17	39	20	1.92
52520--52626	20	5.3	20	96	0	169	34	21	19	24	1.96
52520--52645	40	3.3	36	84	12	123	34	21	21	22	1.96
52673--52719	20	2.3	20	88	0	67	21	19	23	36	1.95
52635--52752	53	2.2	53	82	5	132	16	19	21	42	1.89
52693--52786	33	2.8	34	83	3	127	13	19	22	44	1.85
54685--54758	20	3.7	20	87	0	85	44	22	17	14	1.86
55108--55173	22	3.0	22	90	0	105	21	10	39	28	1.86
55352--55403	20	2.6	20	100	0	104	23	21	25	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55392--55463	20	3.5	20	79	3	90	20	22	20	36	1.96
55372--55463	41	2.3	40	88	1	130	21	21	21	34	1.97
55460--55505	21	2.2	21	92	0	74	39	17	26	17	1.91
57800--57874	2	38.5	2	94	5	136	49	0	0	50	1.00
58318--58342	13	1.9	13	100	0	50	32	12	24	32	1.91
58512--58536	3	8.3	3	100	0	50	0	0	32	68	0.90
59495--59527	17	1.9	17	100	0	66	18	33	0	48	1.48
62293--62326	10	3.5	10	92	4	52	17	5	0	76	0.98

Tables:   1

The End!