genome.fa.s4832.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004832.1 Hibiscus syriacus cultivar Beakdansim tig00010885_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94147

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3285--3316	11	2.9	11	100	0	64	15	0	0	84	0.63
8399--8512	61	1.9	60	83	5	149	49	5	15	29	1.67
8744--8812	32	2.2	32	89	0	102	42	18	7	31	1.78
8811--8902	5	19.2	5	87	12	140	60	0	0	39	0.97
8803--8902	39	2.6	37	86	11	141	61	0	0	39	0.96
13012--13042	5	6.2	5	100	0	62	38	0	0	61	0.96
15111--15137	2	13.5	2	100	0	54	51	0	0	48	1.00
15115--15432	162	2.0	161	89	1	485	48	6	5	40	1.50
15628--15925	20	14.6	20	77	7	224	40	19	22	17	1.91
15630--15915	63	4.6	63	78	10	252	40	19	22	17	1.92
16013--16080	6	11.5	6	98	1	129	32	51	16	0	1.45
16771--16832	6	10.5	6	98	1	117	0	16	51	32	1.44
16850--16900	19	2.6	20	87	3	68	17	17	21	43	1.88
23925--23953	12	2.5	12	94	5	51	62	0	0	37	0.96
30262--30288	12	2.2	12	100	0	54	40	0	59	0	0.98
47724--47801	3	26.0	3	100	0	156	66	0	0	33	0.92
48560--48619	29	2.1	29	96	0	111	25	28	28	18	1.98
48704--48785	32	2.6	32	98	0	155	28	26	35	9	1.88
48772--48863	29	3.2	29	90	0	139	15	28	31	25	1.95
49176--49214	16	2.3	18	86	8	55	38	0	5	56	1.22
49319--49410	46	2.0	48	85	12	129	41	0	10	47	1.38
55224--55286	21	2.9	21	83	4	63	20	38	25	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55268--55307	21	1.9	21	89	0	62	25	40	25	10	1.86
58750--58827	34	2.3	33	83	12	97	42	0	11	46	1.40
58873--58919	16	3.0	16	84	9	53	29	0	10	59	1.31
58894--58924	15	2.1	14	94	5	53	38	0	6	54	1.26
59956--61114	11	96.5	11	65	25	207	47	9	2	41	1.48
60099--60293	46	4.3	45	66	19	136	47	10	0	41	1.41
60135--60607	49	9.5	49	69	19	178	46	9	2	42	1.48
60164--60232	35	1.9	37	88	5	106	50	4	0	44	1.21
60205--60371	26	6.7	26	76	13	145	43	9	1	45	1.47
60399--60455	25	2.3	25	93	0	96	47	10	3	38	1.55
59938--60005	28	2.5	25	86	11	73	45	7	1	45	1.40
60429--60973	33	16.8	33	70	20	234	47	9	2	40	1.51
60445--60509	19	3.7	19	70	19	68	46	10	3	40	1.54
60282--61095	226	3.6	226	97	0	1493	46	9	2	41	1.50
59953--61050	14	80.2	13	69	23	264	47	9	2	41	1.48
60495--61059	25	22.5	25	67	20	96	47	9	2	40	1.49
60671--60735	19	3.7	19	70	19	68	46	10	3	40	1.54
60688--60804	49	2.5	46	83	5	135	49	6	2	41	1.43
60813--60868	19	3.1	19	73	23	66	48	12	0	39	1.41
60897--60961	19	3.7	19	70	19	68	46	10	3	40	1.54
60914--61030	49	2.5	46	83	5	135	49	6	2	41	1.43
64167--64220	28	1.9	28	92	0	90	55	12	0	31	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64163--64227	28	2.3	28	82	10	87	53	10	0	35	1.36
64197--64245	21	2.3	21	85	3	71	53	16	0	30	1.43
64898--64943	10	4.3	10	82	15	56	8	19	50	21	1.75
64877--64959	30	3.0	30	75	23	108	8	19	49	22	1.75
64912--64950	13	3.2	13	79	20	57	12	17	46	23	1.83
64902--64963	23	2.8	22	88	11	92	9	19	48	22	1.78
64952--65059	29	3.7	29	100	0	216	13	34	37	13	1.85
65812--65838	2	13.5	2	100	0	54	51	0	48	0	1.00
72546--73811	349	3.6	349	86	1	1691	31	12	23	32	1.91
73616--74007	195	2.0	196	87	0	561	32	13	22	31	1.92
81752--81865	45	2.5	45	92	0	183	20	10	12	57	1.64
82871--82954	35	2.6	31	72	26	75	46	1	4	47	1.31
85919--85959	21	2.0	21	90	0	64	26	26	21	24	2.00
88134--88226	20	4.6	20	85	2	114	44	20	21	13	1.86
88234--88348	20	5.7	19	75	11	68	33	23	17	25	1.96
88514--88556	21	2.0	21	95	0	77	20	44	16	18	1.87
88819--88877	20	3.0	20	82	0	64	16	16	22	44	1.87
90195--90239	18	2.5	18	88	0	72	26	44	15	13	1.83
90704--90749	20	2.3	20	88	0	65	36	26	21	15	1.93
90715--90773	19	3.1	19	85	2	73	38	20	23	16	1.92
90792--90847	20	2.8	19	86	7	76	16	25	23	35	1.94
92687--92722	14	2.6	14	90	0	54	30	0	22	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92839--92887	19	2.6	19	93	0	89	48	14	20	16	1.80
92924--92961	20	1.9	20	88	0	58	18	21	21	39	1.93
93997--94049	23	2.3	23	83	0	70	28	16	18	35	1.93

Tables:   1

The End!