genome.fa.s4833.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004833.1 Hibiscus syriacus cultivar Beakdansim tig00010887_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78485

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7259--7305	13	3.5	13	76	18	51	61	2	0	36	1.08
7244--7324	29	2.7	30	74	12	78	55	1	1	41	1.15
10351--10378	11	2.5	11	100	0	56	32	10	21	35	1.88
14568--14707	36	3.9	35	84	2	172	37	19	25	18	1.94
14743--14788	3	15.7	3	95	4	85	65	0	34	0	0.93
15373--15409	19	1.9	19	100	0	74	27	5	27	40	1.78
15812--15857	23	1.9	24	86	8	67	30	0	0	69	0.89
20064--20105	21	2.0	21	95	0	75	16	23	16	42	1.88
21912--22155	123	2.0	118	87	7	346	35	18	23	22	1.95
29471--29525	23	2.4	23	90	0	83	25	27	36	10	1.89
31305--31368	20	3.2	20	90	0	101	29	18	3	48	1.64
44928--45004	32	2.5	30	79	6	84	55	3	2	37	1.32
46074--46109	12	3.0	12	87	0	54	50	0	0	50	1.00
49103--49143	8	5.2	8	82	5	57	34	0	29	36	1.58
49216--50097	128	6.9	128	96	0	1588	23	25	19	31	1.98
50497--50596	33	3.0	34	83	2	139	39	3	4	54	1.35
51119--51188	21	3.3	20	90	5	95	18	27	35	18	1.94
51192--51239	21	2.3	21	85	0	60	22	12	39	25	1.89
52978--53021	19	2.4	19	81	7	56	54	2	0	43	1.12
52965--53052	17	5.1	18	70	21	55	59	2	0	38	1.10
52993--53064	34	2.1	34	82	10	85	63	5	0	30	1.17
60296--60334	14	2.6	16	80	16	55	41	5	2	51	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60811--60844	15	2.3	15	90	5	52	50	0	0	50	1.00
63013--63052	20	1.9	20	85	10	53	27	2	15	55	1.53
73779--73848	35	2.0	34	86	5	95	37	4	15	42	1.67
74695--74769	30	2.5	30	95	2	132	24	21	25	29	1.99

Tables:   1

The End!