Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004834.1 Hibiscus syriacus cultivar Beakdansim tig00010888_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 393506
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
File 1 of 2
Found at i:3402 original size:33 final size:32
Alignment explanation
Indices: 3365--3432 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 32
3355 TTACATCAAT
3365 AAATCTGTAAATGACTGTAACAGTTGGGAAAAA
1 AAATCTGTAAATGACTGTAACAGTT-GGAAAAA
*
3398 AAATCTGTAAATGACTGTAACAGTTTGAAAAA
1 AAATCTGTAAATGACTGTAACAGTTGGAAAAA
3430 AAA
1 AAA
3433 GACTTACACC
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 9 0.26
33 25 0.74
ACGTcount: A:0.49, C:0.09, G:0.18, T:0.25
Consensus pattern (32 bp):
AAATCTGTAAATGACTGTAACAGTTGGAAAAA
Found at i:3980 original size:20 final size:20
Alignment explanation
Indices: 3955--3993 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
3945 CTTTAAATAC
3955 CTTCTCAAAGGTATATTCAG
1 CTTCTCAAAGGTATATTCAG
3975 CTTCTCAAAGGTATATTCA
1 CTTCTCAAAGGTATATTCA
3994 TATTTCATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
CTTCTCAAAGGTATATTCAG
Found at i:4477 original size:43 final size:43
Alignment explanation
Indices: 4429--4662 Score: 233
Period size: 43 Copynumber: 5.4 Consensus size: 43
4419 TTTCAAGAAA
4429 AAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTTGACAGAC
1 AAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTTGACAGAC
* * *
4472 AAACGCCACAATAGATGTTGATATTTAGCGGCGTTTGGA-AGCC
1 AAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTT-GACAGAC
* * *
4515 AAACGCCGTAATAGATGTTGATATTTAGCGGCATTTGGA-AGAC
1 AAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTT-GACAGAC
* * * ** ** *
4558 AAACGCCGCAATAGGTGTCGCTTTTTAGCGGCGTTTTTCCCAG
1 AAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTTGACAGAC
* * * *
4601 AAACGCCGCAGTAGGTGTTGATGTTTAGTGGCGTTTTTATC--AC
1 AAACGCCGCAATAGGTGTTGATATTTAGCGGCG-TTTGA-CAGAC
*
4644 AAACGCCGCAATAAGTGTT
1 AAACGCCGCAATAGGTGTT
4663 AAGGTTTCGC
Statistics
Matches: 160, Mismatches: 27, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
43 153 0.96
44 6 0.04
45 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (43 bp):
AAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTTGACAGAC
Found at i:4675 original size:129 final size:129
Alignment explanation
Indices: 4429--4675 Score: 273
Period size: 129 Copynumber: 1.9 Consensus size: 129
4419 TTTCAAGAAA
* *
4429 AAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTTGACAGACAAACGCCACAATAGATGTTGAT
1 AAACGCCGCAATAGGTGTCGATATTTAGCGGCGTTTGACACACAAACGCCACAATAGATGTTGAT
* * *
4494 ATTTAGCGGCGTTTGGAAGCCAAACGCCGTAATAGATGTTGATATTTAGCGGCATTTGGAAGAC
66 ATTTAGCGGCGTTTGGAAGCCAAACGCCGCAATAGATGTTAAGATTTAGCGGCATTTGGAAGAC
* * ** * * * * *
4558 AAACGCCGCAATAGGTGTCGCTTTTTAGCGGCGTTTTTCCCAGAAACGCCGCAGTAGGTGTTGAT
1 AAACGCCGCAATAGGTGTCGATATTTAGCGGCGTTTGACACACAAACGCCACAATAGATGTTGAT
* * ** * * *
4623 GTTTAGTGGCGTTT-TTATCACAAACGCCGCAATA-AGTGTTAAGGTTTCGCGGC
66 ATTTAGCGGCGTTTGGAAGC-CAAACGCCGCAATAGA-TGTTAAGATTTAGCGGC
4676 GTCTTTAGCT
Statistics
Matches: 95, Mismatches: 21, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
128 3 0.03
129 92 0.97
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (129 bp):
AAACGCCGCAATAGGTGTCGATATTTAGCGGCGTTTGACACACAAACGCCACAATAGATGTTGAT
ATTTAGCGGCGTTTGGAAGCCAAACGCCGCAATAGATGTTAAGATTTAGCGGCATTTGGAAGAC
Found at i:4677 original size:43 final size:43
Alignment explanation
Indices: 4581--4705 Score: 124
Period size: 43 Copynumber: 2.9 Consensus size: 43
4571 GGTGTCGCTT
* * * * * *
4581 TTTAGCGGCGTTTTTCCCAGAAACGCCGCAGTAGGTGTTGATG
1 TTTAGCGGCGTTTTTACCACAAACGCCGCAATAAGTGTTAAGG
* *
4624 TTTAGTGGCGTTTTTATCACAAACGCCGCAATAAGTGTTAAGG
1 TTTAGCGGCGTTTTTACCACAAACGCCGCAATAAGTGTTAAGG
* * * ** *
4667 TTTCGCGGCGTCTTTAGCTTAAACGCCGCAATATGTGTT
1 TTTAGCGGCGTTTTTACCACAAACGCCGCAATAAGTGTT
4706 TGATTTGGCG
Statistics
Matches: 67, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 67 1.00
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.33
Consensus pattern (43 bp):
TTTAGCGGCGTTTTTACCACAAACGCCGCAATAAGTGTTAAGG
Found at i:5122 original size:21 final size:21
Alignment explanation
Indices: 5097--5136 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
5087 GCTGATATGT
5097 TGCCTCTCTTTGTGCTGCCGC
1 TGCCTCTCTTTGTGCTGCCGC
5118 TGCCTCTCTTTGTGCTGCC
1 TGCCTCTCTTTGTGCTGCC
5137 ACTGTTTCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.00, C:0.38, G:0.23, T:0.40
Consensus pattern (21 bp):
TGCCTCTCTTTGTGCTGCCGC
Found at i:5205 original size:21 final size:21
Alignment explanation
Indices: 5144--5199 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
5134 GCCACTGTTT
5144 CTCTCTCTGCTTCCGCTGCTG
1 CTCTCTCTGCTTCCGCTGCTG
**
5165 CTCTGGCTGCTTCCGCTGCTG
1 CTCTCTCTGCTTCCGCTGCTG
5186 CTCTCTCTGCTTCC
1 CTCTCTCTGCTTCC
5200 CTTGCTTCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.00, C:0.43, G:0.20, T:0.38
Consensus pattern (21 bp):
CTCTCTCTGCTTCCGCTGCTG
Found at i:7452 original size:46 final size:46
Alignment explanation
Indices: 7385--7475 Score: 173
Period size: 46 Copynumber: 2.0 Consensus size: 46
7375 TAACGATTCT
*
7385 GAAATAACTACATGGTCAAACAAGACAGAGGAACGAAGGCAAGTAC
1 GAAATAACTACATGGTCAAACAAGAAAGAGGAACGAAGGCAAGTAC
7431 GAAATAACTACATGGTCAAACAAGAAAGAGGAACGAAGGCAAGTA
1 GAAATAACTACATGGTCAAACAAGAAAGAGGAACGAAGGCAAGTA
7476 AGTACCTTAG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.49, C:0.15, G:0.24, T:0.11
Consensus pattern (46 bp):
GAAATAACTACATGGTCAAACAAGAAAGAGGAACGAAGGCAAGTAC
Found at i:8360 original size:42 final size:41
Alignment explanation
Indices: 8286--8523 Score: 134
Period size: 41 Copynumber: 5.8 Consensus size: 41
8276 AATGTTAAAA
* * *
8286 ATTTGCAGCGTTTTTTGTCAAAACGCCACTAAAGTACGCAT
1 ATTTGCGGCGTTTTTAGTCAAAACGCCACTAAAGTACGAAT
** * *
8327 CATTTGCGGCGTTTGTTAG-CAAAACGCTGCTAAATTACTAAT
1 -ATTTGCGGCGTTT-TTAGTCAAAACGCCACTAAAGTACGAAT
* *
8369 ACTTTGCGGCGTTTCTA--CGAAAACGCCACTAAAGTACGAGT
1 A-TTTGCGGCGTTTTTAGTC-AAAACGCCACTAAAGTACGAAT
* * * * *
8410 CTATAGTGGCGTTTTCA-T-ACGAACGCCACTAAAGTA-GAAGT
1 AT-TTGCGGCGTTTTTAGTCA-AAACGCCACTAAAGTACGAA-T
* * * * *
8451 CTATAGCGGCGTTTTCA-T-ACAAACGCCACTAAAATACAAAT
1 AT-TTGCGGCGTTTTTAGTCA-AAACGCCACTAAAGTACGAAT
*
8492 ATTTTGCGGCGTTTTTTA-TAAAAACGCCACTA
1 A-TTTGCGGCG-TTTTTAGTCAAAACGCCACTA
8524 TATAATACAC
Statistics
Matches: 158, Mismatches: 27, Indels: 22
0.76 0.13 0.11
Matches are distributed among these distances:
40 5 0.03
41 87 0.55
42 62 0.39
43 4 0.03
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.29
Consensus pattern (41 bp):
ATTTGCGGCGTTTTTAGTCAAAACGCCACTAAAGTACGAAT
Found at i:8421 original size:41 final size:42
Alignment explanation
Indices: 8374--8483 Score: 158
Period size: 41 Copynumber: 2.7 Consensus size: 42
8364 CTAATACTTT
8374 GCGGCG-TTTC-TACGAAAACGCCACTAAAGTACG-AGTCTATA
1 GCGGCGTTTTCATACG-AAACGCCACTAAAGTA-GAAGTCTATA
*
8415 GTGGCGTTTTCATACG-AACGCCACTAAAGTAGAAGTCTATA
1 GCGGCGTTTTCATACGAAACGCCACTAAAGTAGAAGTCTATA
8456 GCGGCGTTTTCATAC-AAACGCCACTAAA
1 GCGGCGTTTTCATACGAAACGCCACTAAA
8484 ATACAAATAT
Statistics
Matches: 63, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
40 1 0.02
41 54 0.86
42 4 0.06
43 4 0.06
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.24
Consensus pattern (42 bp):
GCGGCGTTTTCATACGAAACGCCACTAAAGTAGAAGTCTATA
Found at i:8501 original size:41 final size:41
Alignment explanation
Indices: 8389--8532 Score: 135
Period size: 41 Copynumber: 3.4 Consensus size: 41
8379 GTTTCTACGA
* * * * *
8389 AAACGCCACTAAAGTACGAGTCTATAGTGGCGTTTTCATAC
1 AAACGCCACTAAAATACAAATATATAGCGGCGTTTTCATAC
* * * * *
8430 GAACGCCACTAAAGTAGAAGTCTATAGCGGCGTTTTCATAC
1 AAACGCCACTAAAATACAAATATATAGCGGCGTTTTCATAC
* * * *
8471 AAACGCCACTAAAATACAAATATTTTGCGGCGTTTTTTATAA
1 AAACGCCACTAAAATACAAATATATAGCGGCG-TTTTCATAC
8513 AAACGCCACTATATAATACA
1 AAACGCCACTA-A-AATACA
8533 CCTATTGCGG
Statistics
Matches: 87, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
41 62 0.71
42 18 0.21
43 1 0.01
44 6 0.07
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (41 bp):
AAACGCCACTAAAATACAAATATATAGCGGCGTTTTCATAC
Found at i:9078 original size:57 final size:57
Alignment explanation
Indices: 8745--9046 Score: 568
Period size: 57 Copynumber: 5.3 Consensus size: 57
8735 ATTAAAACAG
8745 AAGTACTTATGCATAAAACTACTTAACAACAAAATACATTATAATTTAGAAACATTA
1 AAGTACTTATGCATAAAACTACTTAACAACAAAATACATTATAATTTAGAAACATTA
*
8802 AAGTACTTATGCATAAAACTACTTAACGACAAAATACATTATAATTTAGAAACATTA
1 AAGTACTTATGCATAAAACTACTTAACAACAAAATACATTATAATTTAGAAACATTA
*
8859 AAGTACTTATGCATAAAACTACTTAAAAACAAAATACATTATAATTTAGAAACATTA
1 AAGTACTTATGCATAAAACTACTTAACAACAAAATACATTATAATTTAGAAACATTA
*
8916 AAGTACTTATGCATAAAACTACTTAACGACAAAATACATTATAATTTAGAAACATTA
1 AAGTACTTATGCATAAAACTACTTAACAACAAAATACATTATAATTTAGAAACATTA
*
8973 AAGTACTTATGCATAAAACTACTTAAAAACAAAATACATTATAATTTAGAAACATTA
1 AAGTACTTATGCATAAAACTACTTAACAACAAAATACATTATAATTTAGAAACATTA
9030 AAGTACTTATGCATAAA
1 AAGTACTTATGCATAAA
9047 CAGTCTTCAC
Statistics
Matches: 238, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 238 1.00
ACGTcount: A:0.51, C:0.13, G:0.06, T:0.30
Consensus pattern (57 bp):
AAGTACTTATGCATAAAACTACTTAACAACAAAATACATTATAATTTAGAAACATTA
Found at i:12384 original size:46 final size:47
Alignment explanation
Indices: 12312--12410 Score: 182
Period size: 46 Copynumber: 2.1 Consensus size: 47
12302 TTTGGTTGGT
*
12312 TTAGCAAGAATGTAAGATTACCGTGTTTGGTTAAAGGAATAAAA-TA
1 TTAGAAAGAATGTAAGATTACCGTGTTTGGTTAAAGGAATAAAATTA
12358 TTAGAAAGAATGTAAGATTACCGTGTTTGGTTAAAGGAATAAAATTA
1 TTAGAAAGAATGTAAGATTACCGTGTTTGGTTAAAGGAATAAAATTA
12405 TTAGAA
1 TTAGAA
12411 TGTATATTTG
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
46 43 0.84
47 8 0.16
ACGTcount: A:0.42, C:0.05, G:0.21, T:0.31
Consensus pattern (47 bp):
TTAGAAAGAATGTAAGATTACCGTGTTTGGTTAAAGGAATAAAATTA
Found at i:12539 original size:37 final size:37
Alignment explanation
Indices: 12466--12540 Score: 91
Period size: 38 Copynumber: 2.0 Consensus size: 37
12456 GTTAGAAAAT
* *
12466 ATTTATATATTTTCTTTAAAAAATTTAAATTCATAAA
1 ATTTATATATTTTCTTTAAAAAATTGAAAATCATAAA
*
12503 ATTTATATAATTTAT-TTTACAAAATTGAAAAT-ATAAA
1 ATTTATAT-ATTT-TCTTTAAAAAATTGAAAATCATAAA
12540 A
1 A
12541 ATATTTAATG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
37 14 0.42
38 18 0.55
39 1 0.03
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.45
Consensus pattern (37 bp):
ATTTATATATTTTCTTTAAAAAATTGAAAATCATAAA
Found at i:13244 original size:76 final size:77
Alignment explanation
Indices: 13097--13323 Score: 273
Period size: 76 Copynumber: 3.0 Consensus size: 77
13087 TAAGAAATAT
** * * * *
13097 GGTTACGCTTAAAAATGCCATGGTTCATTAAGAAATAAGTTTTGATAT-AGAATGTTAATATTTT
1 GGTTACGCCAAAAAATGTCATAGTTCACTAAGAAATAAGTTGTGATATGA-AATGTTAATATTTT
*
13161 TAATAATAAAATG
65 TATTAATAAAATG
* *
13174 TGTTACGCCAAAAAATGTCATAGTTCACTAAGAAAT-AGTTGCGATATGAAATGTTAATATTTTT
1 GGTTACGCCAAAAAATGTCATAGTTCACTAAGAAATAAGTTGTGATATGAAATGTTAATATTTTT
13238 ATTAATAAAATG
66 ATTAATAAAATG
* * * * * *
13250 GGTTGCACCAAATAATGTTATAGTTCACTAAGAAAGTAAGTTGTGATATG-AATATTAATAATTT
1 GGTTACGCCAAAAAATGTCATAGTTCACTAAGAAA-TAAGTTGTGATATGAAATGTTAATATTTT
13314 TATT-ATAAAA
65 TATTAATAAAA
13324 AATAAAAAAA
Statistics
Matches: 130, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
76 71 0.55
77 48 0.37
78 11 0.08
ACGTcount: A:0.41, C:0.07, G:0.15, T:0.37
Consensus pattern (77 bp):
GGTTACGCCAAAAAATGTCATAGTTCACTAAGAAATAAGTTGTGATATGAAATGTTAATATTTTT
ATTAATAAAATG
Found at i:14009 original size:2 final size:2
Alignment explanation
Indices: 14002--14034 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
13992 AGAAATTGGA
14002 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14035 ATTGAAATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14777 original size:9 final size:9
Alignment explanation
Indices: 14751--14802 Score: 50
Period size: 9 Copynumber: 5.4 Consensus size: 9
14741 GCCTTGTAAT
*
14751 CGGTTTGAT
1 CGGTTTGAC
14760 CGGTTTTTGAC
1 CGG--TTTGAC
14771 CGGTTTGAC
1 CGGTTTGAC
**
14780 CGGAATGAAC
1 CGGTTTG-AC
14790 CGGTTTGAC
1 CGGTTTGAC
14799 CGGT
1 CGGT
14803 CTGAATCGGG
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
9 20 0.57
10 7 0.20
11 8 0.23
ACGTcount: A:0.15, C:0.19, G:0.33, T:0.33
Consensus pattern (9 bp):
CGGTTTGAC
Found at i:14816 original size:19 final size:19
Alignment explanation
Indices: 14769--14816 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
14759 TCGGTTTTTG
*
14769 ACCGGTTTGACCGGAATGA
1 ACCGGGTTGACCGGAATGA
* **
14788 ACCGGTTTGACCGGTCTGA
1 ACCGGGTTGACCGGAATGA
*
14807 ATCGGGTTGA
1 ACCGGGTTGA
14817 TCAGTTCGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.21, C:0.21, G:0.33, T:0.25
Consensus pattern (19 bp):
ACCGGGTTGACCGGAATGA
Found at i:14842 original size:13 final size:13
Alignment explanation
Indices: 14824--14878 Score: 94
Period size: 13 Copynumber: 4.3 Consensus size: 13
14814 TGATCAGTTC
14824 GACCCGACCCGTT
1 GACCCGACCCGTT
*
14837 GACCCGACCAGTT
1 GACCCGACCCGTT
14850 GACCCGACCCGTT
1 GACCCGACCCGTT
14863 GACCCGA-CCGTT
1 GACCCGACCCGTT
14875 GACC
1 GACC
14879 GGGTGGTATT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
12 9 0.22
13 31 0.77
ACGTcount: A:0.18, C:0.44, G:0.24, T:0.15
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:14854 original size:26 final size:26
Alignment explanation
Indices: 14818--14878 Score: 106
Period size: 26 Copynumber: 2.3 Consensus size: 26
14808 TCGGGTTGAT
14818 CAGTTCGACCCGACCCGTTGACCCGAC
1 CAGTT-GACCCGACCCGTTGACCCGAC
14845 CAGTTGACCCGACCCGTTGACCCGAC
1 CAGTTGACCCGACCCGTTGACCCGAC
14871 C-GTTGACC
1 CAGTTGACC
14879 GGGTGGTATT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
25 7 0.21
26 22 0.65
27 5 0.15
ACGTcount: A:0.18, C:0.43, G:0.23, T:0.16
Consensus pattern (26 bp):
CAGTTGACCCGACCCGTTGACCCGAC
Found at i:14914 original size:29 final size:29
Alignment explanation
Indices: 14880--15029 Score: 155
Period size: 29 Copynumber: 5.2 Consensus size: 29
14870 CCGTTGACCG
*
14880 GGTGGTATTTTGGTAATTATTTTGAAAAT
1 GGTGATATTTTGGTAATTATTTTGAAAAT
* *
14909 GGTGGTATTCTGGTAATTATTTTGAAAAT
1 GGTGATATTTTGGTAATTATTTTGAAAAT
* *
14938 GGTGCTATTTTCGTAATT-TTCTT-AAAA-
1 GGTGATATTTTGGTAATTATT-TTGAAAAT
* *
14965 -ATGATATTTTAGTAATTATTTTGAAAAT
1 GGTGATATTTTGGTAATTATTTTGAAAAT
* * * *
14993 GGTGATATTTCGGTAAATATTTTTTAAAAG
1 GGTGATATTTTGGTAATTA-TTTTGAAAAT
15023 GGTGATA
1 GGTGATA
15030 ATTGTGTAAA
Statistics
Matches: 102, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
26 16 0.16
27 6 0.06
28 6 0.06
29 59 0.58
30 15 0.15
ACGTcount: A:0.31, C:0.03, G:0.20, T:0.46
Consensus pattern (29 bp):
GGTGATATTTTGGTAATTATTTTGAAAAT
Found at i:15029 original size:30 final size:29
Alignment explanation
Indices: 14966--15029 Score: 74
Period size: 30 Copynumber: 2.2 Consensus size: 29
14956 TTCTTAAAAA
* * *
14966 TGATATTTTAGTAATTATTTTGAAAATGG
1 TGATATTTCAGTAAATATTTTGAAAAGGG
* *
14995 TGATATTTCGGTAAATATTTTTTAAAAGGG
1 TGATATTTCAGTAAATA-TTTTGAAAAGGG
15025 TGATA
1 TGATA
15030 ATTGTGTAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 14 0.48
30 15 0.52
ACGTcount: A:0.34, C:0.02, G:0.19, T:0.45
Consensus pattern (29 bp):
TGATATTTCAGTAAATATTTTGAAAAGGG
Found at i:17508 original size:20 final size:21
Alignment explanation
Indices: 17468--17510 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
17458 CAATATTTTC
*
17468 TTAGAAAATTATTTTTAAAAT
1 TTAGAAAATTAGTTTTAAAAT
*
17489 TTAGAAAATT-GTTTTCAAAT
1 TTAGAAAATTAGTTTTAAAAT
17509 TT
1 TT
17511 TTTTAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (21 bp):
TTAGAAAATTAGTTTTAAAAT
Found at i:19922 original size:35 final size:35
Alignment explanation
Indices: 19883--20002 Score: 159
Period size: 35 Copynumber: 3.4 Consensus size: 35
19873 AGATGAACAA
* *
19883 TTGAATCGAAAGTGCTGATGCTTCCTTCCGTTCAC
1 TTGAATCGAAAGTGCCGATGCTTCATTCCGTTCAC
* ** *
19918 TTGAATCGAAAGTTCCGATGCTTCATTTTGTTCTTC
1 TTGAATCGAAAGTGCCGATGCTTCATTCCGTTC-AC
* *
19954 TTGAATTGAAAGTGCCAATGCTTCATTCCGTTCAC
1 TTGAATCGAAAGTGCCGATGCTTCATTCCGTTCAC
19989 TTGAATCGAAAGTG
1 TTGAATCGAAAGTG
20003 ACAATCCTTC
Statistics
Matches: 71, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
35 42 0.59
36 29 0.41
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (35 bp):
TTGAATCGAAAGTGCCGATGCTTCATTCCGTTCAC
Found at i:20013 original size:71 final size:71
Alignment explanation
Indices: 19883--20026 Score: 198
Period size: 71 Copynumber: 2.0 Consensus size: 71
19873 AGATGAACAA
** * ** * * **
19883 TTGAATCGAAAGTGCTGATGCTTCCTTCCGTTCACTTGAATCGAAAGTTCCGATGCTTCATTTTG
1 TTGAATCGAAAGTGCCAATGCTTCATTCCGTTCACTTGAATCGAAAGTGACAATCCTTCATTTCA
19948 TTCTTC
66 TTCTTC
*
19954 TTGAATTGAAAGTGCCAATGCTTCATTCCGTTCACTTGAATCGAAAGTGACAATCCTTCATTTCA
1 TTGAATCGAAAGTGCCAATGCTTCATTCCGTTCACTTGAATCGAAAGTGACAATCCTTCATTTCA
20019 TTCTTC
66 TTCTTC
20025 TT
1 TT
20027 ATCCACCTTC
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
71 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (71 bp):
TTGAATCGAAAGTGCCAATGCTTCATTCCGTTCACTTGAATCGAAAGTGACAATCCTTCATTTCA
TTCTTC
Found at i:20035 original size:24 final size:25
Alignment explanation
Indices: 20008--20055 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 25
19998 AAGTGACAAT
20008 CCTTCATTTCATTCTTCTT-ATCCA
1 CCTTCATTTCATTCTTCTTCATCCA
*
20032 CCTTCATTTCTTTCTTCTTCATCC
1 CCTTCATTTCATTCTTCTTCATCC
20056 TCTTTTACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 18 0.82
25 4 0.18
ACGTcount: A:0.12, C:0.35, G:0.00, T:0.52
Consensus pattern (25 bp):
CCTTCATTTCATTCTTCTTCATCCA
Found at i:26284 original size:35 final size:35
Alignment explanation
Indices: 26238--26307 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
26228 AGGAAATGTA
26238 GAGGCTTTGTCTATGAGTTTATACCGTATTAGTGT
1 GAGGCTTTGTCTATGAGTTTATACCGTATTAGTGT
**
26273 GAGGCTTTGTCTATGAGTTTATAGTGTATTAGTGT
1 GAGGCTTTGTCTATGAGTTTATACCGTATTAGTGT
26308 AGCAAATACT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.20, C:0.09, G:0.27, T:0.44
Consensus pattern (35 bp):
GAGGCTTTGTCTATGAGTTTATACCGTATTAGTGT
Found at i:40378 original size:2 final size:2
Alignment explanation
Indices: 40371--40396 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
40361 TAGACAATAA
40371 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
40397 TGCCCTTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:43990 original size:21 final size:21
Alignment explanation
Indices: 43966--44024 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
43956 ATAATGAATT
43966 GTCAATTTGAAAAATTAAAAG
1 GTCAATTTGAAAAATTAAAAG
*
43987 GTCAATTT-AAAATATTAAATG
1 GTCAATTTGAAAA-ATTAAAAG
** *
44008 ACCAATTTGAAATATTA
1 GTCAATTTGAAAAATTA
44025 GTGAGCATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 4 0.12
21 25 0.78
22 3 0.09
ACGTcount: A:0.49, C:0.07, G:0.10, T:0.34
Consensus pattern (21 bp):
GTCAATTTGAAAAATTAAAAG
Found at i:46395 original size:23 final size:23
Alignment explanation
Indices: 46365--46421 Score: 87
Period size: 23 Copynumber: 2.5 Consensus size: 23
46355 CGAAGCTGTC
46365 GTATCGGTACACTCAATATGAAT
1 GTATCGGTACACTCAATATGAAT
* *
46388 GTATCGGTACGCTCAATATGACT
1 GTATCGGTACACTCAATATGAAT
*
46411 GTATCAGTACA
1 GTATCGGTACA
46422 TAACACATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (23 bp):
GTATCGGTACACTCAATATGAAT
Found at i:59122 original size:47 final size:49
Alignment explanation
Indices: 59053--59145 Score: 136
Period size: 47 Copynumber: 1.9 Consensus size: 49
59043 AATACTTCGC
* * *
59053 TTAGGATGAAAACCCGAGAGGGCGTCCTAAGTTGA-AAA-AAAAAACGT
1 TTAGGATGAAAACCCGAAAGGGCGCCCTAAATTGAGAAAGAAAAAACGT
*
59100 TTAGGGTGAAAACCCGAAAGGGCGCCCTAAATTGAGAAAGAAAAAA
1 TTAGGATGAAAACCCGAAAGGGCGCCCTAAATTGAGAAAGAAAAAA
59146 GAAAAAGAGG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
47 31 0.77
48 3 0.08
49 6 0.15
ACGTcount: A:0.44, C:0.15, G:0.26, T:0.15
Consensus pattern (49 bp):
TTAGGATGAAAACCCGAAAGGGCGCCCTAAATTGAGAAAGAAAAAACGT
Found at i:59169 original size:9 final size:8
Alignment explanation
Indices: 59138--59175 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
59128 AAATTGAGAA
59138 AGAAAAA-
1 AGAAAAAG
59145 AGAAAAAG
1 AGAAAAAG
*
59153 AGGAAAAG
1 AGAAAAAG
59161 AGAATAAAG
1 AGAA-AAAG
59170 AGAAAA
1 AGAAAA
59176 TAAGGTGGGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
7 7 0.26
8 12 0.44
9 8 0.30
ACGTcount: A:0.74, C:0.00, G:0.24, T:0.03
Consensus pattern (8 bp):
AGAAAAAG
Found at i:60069 original size:105 final size:105
Alignment explanation
Indices: 59887--60662 Score: 1250
Period size: 105 Copynumber: 7.4 Consensus size: 105
59877 AGGTTTTACC
* *
59887 CAGAGCTAATTTCAACTTCACAACGAAGGATATTGGACTCTAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
59952 ACGAGGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
*
59992 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCTAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
60057 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
*
60097 CAGAACCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
60162 ACGAAGGGACCGCTGGTTGTCAACAAATATTTCTCAAATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
*
60202 CAGAGCCAATTTCAACTTCACAACGAAGGATA-TGGACTCTAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
60266 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
*
60306 CAGAACCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* * *
60371 ACGAAGGGACCGCTGGTTGTCAATAACCATTTCTC-AATCC
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAAT-T
* *
60411 CAGAGTCAATTTCAACTTCACAACGAAGGATATTTGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* *
60476 ACAAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
* * ****
60516 CAGAGCCAATTTCAACTTCACCACGAAGGATATTGGACTCAAGACAGTATAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
** ** * *
60581 ACGAAGGGACCGCTGACTGTCAACCGACAACTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAAC-ATTTCTCAAATT
** *
60622 CAGAGCCAATTTCAACTTCACAGTGAATGATATTGGACTCC
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
60663 GGAACAATAC
Statistics
Matches: 627, Mismatches: 40, Indels: 7
0.93 0.06 0.01
Matches are distributed among these distances:
104 104 0.17
105 474 0.76
106 49 0.08
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (105 bp):
CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
Found at i:60303 original size:314 final size:315
Alignment explanation
Indices: 59887--60662 Score: 1268
Period size: 314 Copynumber: 2.5 Consensus size: 315
59877 AGGTTTTACC
*
59887 CAGAGCTAATTTCAACTTCACAACGAAGGATATTGGACTCTAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCTAGACAACGCAAGTTCAACTTCACG
*
59952 ACGAGGGGACCGCTGGTTGTCAACAAACATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACG
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACG
*
60017 AAGGATATTGGACTCTAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACA
131 AAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACA
*
60082 AACATTTCTCAAAT-TCAGAACCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACG
196 AACATTTCTC-AATCCCAGAACCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACG
* *
60146 CAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAATATTTCTCAAATT
260 CAAGTTCAACTTCACGACAAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
60202 CAGAGCCAATTTCAACTTCACAACGAAGGATA-TGGACTCTAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCTAGACAACGCAAGTTCAACTTCACG
*
60266 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATTCAGAACCAATTTCAACTTCACAACG
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACG
*
60331 AAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATA
131 AAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACA
* ** *
60396 ACCATTTCTCAATCCCAGAGTCAATTTCAACTTCACAACGAAGGATATTTGACTCCAGACAACGC
196 AACATTTCTCAATCCCAGAACCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGC
*
60461 AAGTTCAACTTCACGACAAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
261 AAGTTCAACTTCACGACAAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
* * ****
60516 CAGAGCCAATTTCAACTTCACCACGAAGGATATTGGACTCAAGACAGTATAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCTAGACAACGCAAGTTCAACTTCACG
** ** * * **
60581 ACGAAGGGACCGCTGACTGTCAACCGACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAGT
66 ACGAAGGGACCGCTGGTTGTCAACAAAC-ATTTCTCAAATTCAGAGCCAATTTCAACTTCACAAC
*
60646 GAATGATATTGGACTCC
130 GAAGGATATTGGACTCC
60663 GGAACAATAC
Statistics
Matches: 429, Mismatches: 29, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
313 3 0.01
314 297 0.69
315 82 0.19
316 47 0.11
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (315 bp):
CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCTAGACAACGCAAGTTCAACTTCACG
ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACG
AAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACA
AACATTTCTCAATCCCAGAACCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGC
AAGTTCAACTTCACGACAAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
Found at i:62302 original size:2 final size:2
Alignment explanation
Indices: 62290--62352 Score: 110
Period size: 2 Copynumber: 32.0 Consensus size: 2
62280 ACTCATATGT
62290 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
62331 TA TA TA TA TA TA TA TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA
62353 CATCTTGCAT
Statistics
Matches: 58, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
1 1 0.02
2 57 0.98
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:62413 original size:37 final size:38
Alignment explanation
Indices: 62363--62438 Score: 95
Period size: 39 Copynumber: 2.0 Consensus size: 38
62353 CATCTTGCAT
62363 TTTATCCTATTATTT-CTTTAC-TTTTT-TATTATTATA
1 TTTATCCTATTATTTACTTT-CTTTTTTCTATTATTATA
* *
62399 TTTATCTTCATTATTTAGTTTCTTTTTTCTATTATTATA
1 TTTATCCT-ATTATTTACTTTCTTTTTTCTATTATTATA
62438 T
1 T
62439 ACATATTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 7 0.21
37 8 0.24
38 8 0.24
39 11 0.32
ACGTcount: A:0.21, C:0.11, G:0.01, T:0.67
Consensus pattern (38 bp):
TTTATCCTATTATTTACTTTCTTTTTTCTATTATTATA
Found at i:62599 original size:135 final size:137
Alignment explanation
Indices: 62422--62690 Score: 420
Period size: 139 Copynumber: 2.0 Consensus size: 137
62412 TTTAGTTTCT
*
62422 TTTTTCTATTATTATATACATATTTTTTCCTCCCTCTCATATTTAGCTA-T-TATATATATGGTG
1 TTTTTCTATTATTATATACATATTTTTTCCTCCCTCTCATATTTAGCTATTATATATATATGGTA
* *
62485 TTAATATTATTATGT-TT-TTACTAACTTTATTTATTTTACTTTATACGCTATTATTTTACATTT
66 TTAATATTATTATATATTCTTACTAACTTTATTTATTCTACTTTATACGCTATTATTTTACATTT
62548 TTTTTAA
131 TTTTTAA
*
62555 TTTTTCTATTATTATTATATATATTTTTTTCCTCCCTCTCATATTTAGCTATTATATATATATGG
1 TTTTTCTATTATTA-TATACATA-TTTTTTCCTCCCTCTCATATTTAGCTATTATATATATATGG
* * * *
62620 TATTGATATTCTTATATATTCTTATTAATTTTATTTATTCTACTTTATACGCTATTATTTTACAT
64 TATTAATATTATTATATATTCTTACTAACTTTATTTATTCTACTTTATACGCTATTATTTTACAT
62685 TTTTTT
129 TTTTTT
62691 ATATGTACAT
Statistics
Matches: 122, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
133 14 0.11
134 7 0.06
135 27 0.22
136 1 0.01
137 24 0.20
138 2 0.02
139 47 0.39
ACGTcount: A:0.25, C:0.12, G:0.04, T:0.59
Consensus pattern (137 bp):
TTTTTCTATTATTATATACATATTTTTTCCTCCCTCTCATATTTAGCTATTATATATATATGGTA
TTAATATTATTATATATTCTTACTAACTTTATTTATTCTACTTTATACGCTATTATTTTACATTT
TTTTTAA
Found at i:63745 original size:2 final size:2
Alignment explanation
Indices: 63740--63774 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
63730 TATATATATA
63740 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
63775 TGTATATGGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:71443 original size:4 final size:4
Alignment explanation
Indices: 71434--76679 Score: 9493
Period size: 4 Copynumber: 1332.5 Consensus size: 4
71424 TTATTTAAAG
71434 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
71482 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
* * *
71530 TATA GATA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
* *
71578 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA GATA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
71626 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
71674 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
71722 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
*
71770 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TATA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
71818 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
* *
71866 TAGA TAGA TAGA TATA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TATA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
71914 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
71962 TAG- -AGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA T--A TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
72006 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
72054 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
72102 TAGA T--A TAGA TAGA TAGA TAGA TAGA TAGA TAGA T--A TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
72146 TA-A TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
*
72193 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TATA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
72241 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA T-GA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
*
72288 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAAA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
72336 TAGA TAGA TAGA T-GA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
72383 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
72431 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
72479 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
72527 TAGA TAGA TAGA TAGA TATGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TA-GA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
72576 T--A TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
72622 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
72670 TAGA TA-A TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
72717 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
*
72765 T--A TAGA TAGA TAGA TAGA TAGA TAGA TATA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
72811 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
*
72859 TAGA TAGA TAGA TAGA TATA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
*
72907 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TATAA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TA-GA TAGA TAGA TAGA
72956 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
73004 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAG-
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
73051 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
*
73099 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TATA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
73147 TAGA TAGA TAGA TAGA TAGA TAGGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TA-GA TAGA TAGA TAGA TAGA TAGA TAGA
73196 TAGA TAGA TAG- -AGA TAGA TAGA TA-A TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
73241 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
73289 T--A TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
73335 TAGA TAGA TAGA TAGA TAGA T--A TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
*
73381 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TATA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
73429 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
73477 TAGA TAGA TAG- -AGA TAGA TAG- TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
73522 TAGA T--A TAGA TA-A TAGA TAGA TAGA TAGA TAGA TAGA TAGA T--A
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
73565 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
73613 TAGA TAGA TA-A TAGA TAGA T--A TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
73658 TAGA TAG- -AGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
73704 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
* * *
73752 TAGA TAGA TAGA TATA GATA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
73800 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
73848 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAG- TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
*
73895 TAGA TATA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
73943 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA T-GA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
73990 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
74038 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA T-GA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
*
74085 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA GAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
74133 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TA-A TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
74180 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
74228 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
74276 TAGA T-GA TAGA TAGA TAGA TAGA T--A TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
74321 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
74369 T-GA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
74416 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
74464 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA T--A
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
74510 TAGA TA-A TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA T-GA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
74556 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
*
74604 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TATA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
74652 TAGA TAGA T-GA TAGA TAGA TAGA TAGA TAGA TATGA T--A TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TA-GA TAGA TAGA TAGA
74698 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
74746 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TA-A TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
74793 TAGA TAGA TAGA TAGA TAGA TAGA T-GA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
74840 TAGA TAGA TAGA TAGA TAGA TAGA TA-A TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
74887 TAGA TAGA TAGA TAGA TAG- TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
74934 TAGA TAGA T--A TAGA TAGA TAGA TAGA TAGA TAGA TAGA T--A TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
74978 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TA-A TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
75025 TAGA TAGA TAG- -AGA TAGA TAGA TA-A TAGA TAGA TAGA TAGA TAG-
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
*
75069 -AGA TAGA TA-A TATA TAGA TAGA TAGA TAGA TAGA TAGA TA-A TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
75114 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
*
75162 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TATA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
75210 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
75258 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
* *
75306 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TATA GAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
*
75354 TAGA TAGA TAGA T-GA TAGA TAGA TAGA TAGA TAGA TAGA TATA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
75401 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
75449 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
75497 TAGA TAGA TAGA TAGA T--A TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
* *
75543 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TATA TAGA TATA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
75591 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
75639 TA-A TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
75686 TAGA T--A TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA T-GA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
75731 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
75779 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
75827 TAGA TAGA TA-A TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
*
75874 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TATA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
*
75922 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TATA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
75970 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
* *
76018 TAGA TAGA TAATA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TCGA TAGA
1 TAGA TAGA T-AGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
76067 TA-A TAGA T--A TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TA-A
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
76111 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
76159 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
76207 TAGA TAGA TAGA T--A TAGA TAGA TAG- TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
76252 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TA-A TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
76299 TAGA TAGA TAGA TAGA TAGA T--A TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
* *
76345 TAGA TAGA TAGA T--A TATA TAGA TAGA TAGA TAGC TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
*
76391 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TATA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
76439 TA-A TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TATGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TA-GA TAGA
76487 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAG- TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
76534 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
76582 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
76630 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
76678 TA
1 TA
76680 TTTTTTTTAT
Statistics
Matches: 5082, Mismatches: 64, Indels: 192
0.95 0.01 0.04
Matches are distributed among these distances:
2 54 0.01
3 108 0.02
4 4899 0.96
5 21 0.00
ACGTcount: A:0.50, C:0.00, G:0.24, T:0.26
Consensus pattern (4 bp):
TAGA
Found at i:77464 original size:24 final size:24
Alignment explanation
Indices: 77437--77482 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
77427 TATTAATAAA
77437 TTTAAAT-TAAAAAATATATTATCT
1 TTTAAATGTAAAAAAT-TATTATCT
*
77461 TTTAAATGTATAAAATTATTAT
1 TTTAAATGTAAAAAATTATTAT
77483 TGTAGGTATC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (24 bp):
TTTAAATGTAAAAAATTATTATCT
Found at i:78440 original size:21 final size:21
Alignment explanation
Indices: 78414--78458 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
78404 TTTTTCCTGA
*
78414 TTACCCGATGGGGATCCCCGT
1 TTACCCGATAGGGATCCCCGT
78435 TTACCCGATAGGGATCCCCGT
1 TTACCCGATAGGGATCCCCGT
78456 TTA
1 TTA
78459 AATCTCTGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.18, C:0.31, G:0.24, T:0.27
Consensus pattern (21 bp):
TTACCCGATAGGGATCCCCGT
Found at i:79324 original size:18 final size:19
Alignment explanation
Indices: 79289--79325 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
79279 TACGAAATGT
79289 AAGATTACCAGTGGGAATAA
1 AAGATTACCAG-GGGAATAA
79309 AAGATTACCA-GGGAATA
1 AAGATTACCAGGGGAATA
79326 GGATTATTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.46, C:0.11, G:0.24, T:0.19
Consensus pattern (19 bp):
AAGATTACCAGGGGAATAA
Found at i:79498 original size:15 final size:15
Alignment explanation
Indices: 79480--79510 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
79470 AAATTCTAAA
79480 TATTTAAATAAAAAT
1 TATTTAAATAAAAAT
*
79495 TATTTATATAAAAAT
1 TATTTAAATAAAAAT
79510 T
1 T
79511 CTATTTTTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TATTTAAATAAAAAT
Found at i:82416 original size:2 final size:2
Alignment explanation
Indices: 82409--82453 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
82399 TAAATCTTTC
82409 AT AT AT AT AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
82450 AT AT
1 AT AT
82454 CAGATTAGAT
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:84637 original size:20 final size:20
Alignment explanation
Indices: 84612--84652 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
84602 CTAGACTACC
84612 AGGAAAAGAATCAAAAGCAA
1 AGGAAAAGAATCAAAAGCAA
84632 AGGAAAAGAATCAAAAGCAA
1 AGGAAAAGAATCAAAAGCAA
84652 A
1 A
84653 AGCAAAGTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.66, C:0.10, G:0.20, T:0.05
Consensus pattern (20 bp):
AGGAAAAGAATCAAAAGCAA
Found at i:84659 original size:20 final size:20
Alignment explanation
Indices: 84614--84659 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
84604 AGACTACCAG
*
84614 GAAAAGAATCAAAAGCAAAG
1 GAAAAGAATCAAAAGCAAAA
84634 GAAAAGAATCAAAAGCAAAA
1 GAAAAGAATCAAAAGCAAAA
*
84654 GCAAAG
1 GAAAAG
84660 TAACATTACT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.65, C:0.11, G:0.20, T:0.04
Consensus pattern (20 bp):
GAAAAGAATCAAAAGCAAAA
Found at i:89695 original size:2 final size:2
Alignment explanation
Indices: 89688--89715 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
89678 TAAGATGTGC
89688 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
89716 TCATCAACTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:93808 original size:51 final size:50
Alignment explanation
Indices: 93753--93876 Score: 167
Period size: 51 Copynumber: 2.5 Consensus size: 50
93743 GCAGTAAAGT
* **
93753 GCGCCCTCTGCACCGCGCTATACGATGATTTGGCGCCACGTGGGGTATAGC
1 GCGCCCCCTGCACCGCGCTATACGATGAGCTGGCGCCACGT-GGGTATAGC
* *
93804 GCGCCCCCTGCACTGCGCTATACGGTGAGCTGGCGCCACGTGGGTATAGC
1 GCGCCCCCTGCACCGCGCTATACGATGAGCTGGCGCCACGTGGGTATAGC
* * *
93854 GCGGCCGCTGCAGCGCGCTATAC
1 GCGCCCCCTGCACCGCGCTATAC
93877 CTGTATATCT
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
50 28 0.44
51 36 0.56
ACGTcount: A:0.15, C:0.34, G:0.33, T:0.19
Consensus pattern (50 bp):
GCGCCCCCTGCACCGCGCTATACGATGAGCTGGCGCCACGTGGGTATAGC
Found at i:94040 original size:12 final size:10
Alignment explanation
Indices: 93999--94039 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
93989 TTTATCACAC
93999 CAAATTCTCT
1 CAAATTCTCT
94009 CAAATTCTCT
1 CAAATTCTCT
94019 -AAATTTCTCT
1 CAAA-TTCTCT
*
94029 CAAATACTCT
1 CAAATTCTCT
94039 C
1 C
94040 TTTTTAAGGT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
9 3 0.11
10 22 0.79
11 3 0.11
ACGTcount: A:0.32, C:0.29, G:0.00, T:0.39
Consensus pattern (10 bp):
CAAATTCTCT
Found at i:94088 original size:13 final size:14
Alignment explanation
Indices: 94060--94088 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
94050 ATATTTTATA
94060 ATGTTTTTACTATT
1 ATGTTTTTACTATT
94074 ATGTTTTTACT-TT
1 ATGTTTTTACTATT
94087 AT
1 AT
94089 TTAATATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.27
14 11 0.73
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (14 bp):
ATGTTTTTACTATT
Found at i:94301 original size:105 final size:108
Alignment explanation
Indices: 94163--94378 Score: 305
Period size: 105 Copynumber: 2.0 Consensus size: 108
94153 TGGAAATCAT
* *
94163 ATATCTCTACACTTTGCTGATACAGTAACATTTTAACG-T-TTTAATTTAAATTATTAATAATAT
1 ATATCTCGACACTTTGCTGATACAGTAACATTTTAACGTTATTTAATTTAAATTATTAATAATAA
* * * *
94226 TTAGTT-ATTTATTTAATGCATGATTATTATATTAATAATTAA
66 TTAGTTGATTCATTTAATACATGATTATTAGATTAAGAATTAA
*
94268 ATATCTCGACACTTTGCTGATAC-GATAACATTTTAACGTTTTAATTTAATTTAAATTATTATTA
1 ATATCTCGACACTTTGCTGATACAG-TAACATTTTAACG--TT-ATTTAATTTAAATTATTAATA
94332 ATAATTAGTTGATTCATTTAATACATGATTATTAGATTAAGAATTAA
62 ATAATTAGTTGATTCATTTAATACATGATTATTAGATTAAGAATTAA
94379 TTTTTGTAAT
Statistics
Matches: 97, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
104 1 0.01
105 35 0.36
108 1 0.01
110 28 0.29
111 32 0.33
ACGTcount: A:0.38, C:0.09, G:0.08, T:0.46
Consensus pattern (108 bp):
ATATCTCGACACTTTGCTGATACAGTAACATTTTAACGTTATTTAATTTAAATTATTAATAATAA
TTAGTTGATTCATTTAATACATGATTATTAGATTAAGAATTAA
Found at i:95077 original size:26 final size:24
Alignment explanation
Indices: 95004--95077 Score: 62
Period size: 25 Copynumber: 3.0 Consensus size: 24
94994 TATATTTTGT
95004 ATTTACTTTATTTTGTTAAATTGTA
1 ATTTACTTTATTTTGTTAAATT-TA
** *
95029 ATTTTTTTTATTATT-TCT-CATTTA
1 ATTTACTTTATT-TTGT-TAAATTTA
95053 ATACTTACTTTATTTTGTTAAATTT
1 AT--TTACTTTATTTTGTTAAATTT
95078 GTTGGACTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 11
0.69 0.11 0.20
Matches are distributed among these distances:
24 4 0.11
25 17 0.46
26 16 0.43
ACGTcount: A:0.26, C:0.07, G:0.04, T:0.64
Consensus pattern (24 bp):
ATTTACTTTATTTTGTTAAATTTA
Found at i:98740 original size:47 final size:48
Alignment explanation
Indices: 98634--98741 Score: 150
Period size: 50 Copynumber: 2.2 Consensus size: 48
98624 TTATACAAAA
98634 CGCGGTACCTGCCCCGCGCTATATAAATTATGTCAGGAGTAAAGGTATGT
1 CGCGGTACCTGCCCCGCGCTATATAAATTATGTC--GAGTAAAGGTATGT
98684 CGCGGTACCTGCCCCGCGCTATATAAAATTATG-C-AGTAAAGGTATAG-
1 CGCGGTACCTGCCCCGCGCTATAT-AAATTATGTCGAGTAAAGGTAT-GT
*
98731 CGTGGTACCTG
1 CGCGGTACCTG
98742 ATCCGTGCTA
Statistics
Matches: 55, Mismatches: 1, Indels: 7
0.87 0.02 0.11
Matches are distributed among these distances:
47 21 0.38
48 1 0.02
50 25 0.45
51 8 0.15
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (48 bp):
CGCGGTACCTGCCCCGCGCTATATAAATTATGTCGAGTAAAGGTATGT
Found at i:98872 original size:52 final size:50
Alignment explanation
Indices: 98765--98877 Score: 136
Period size: 52 Copynumber: 2.2 Consensus size: 50
98755 CCCTACGTGG
**
98765 CGTATAGCGCGCTGCAGGGGCCGCACTATACCCACATGGCGCCAGCTCAC
1 CGTATAGCGCGCTGCAGGGGCCGCACTATACCCACATGGCGCCAAATCAC
* * * * * *
98815 CGTATAGCGCGGTGCAGGGGGGCGCGCTATACCCCACGTGGTGCCAAATCAT
1 CGTATAGCGCGCTGCA-GGGGCCGCACTATA-CCCACATGGCGCCAAATCAC
98867 CGTATAGCGCG
1 CGTATAGCGCG
98878 ATGTAGGGTG
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
50 15 0.28
51 12 0.23
52 26 0.49
ACGTcount: A:0.19, C:0.33, G:0.32, T:0.16
Consensus pattern (50 bp):
CGTATAGCGCGCTGCAGGGGCCGCACTATACCCACATGGCGCCAAATCAC
Found at i:102591 original size:248 final size:248
Alignment explanation
Indices: 102153--102648 Score: 974
Period size: 248 Copynumber: 2.0 Consensus size: 248
102143 GCTCATCACC
*
102153 CTGCATTGTCGCTGGTCCTCGAACTCGTGACCTCTAGGAATCAACAACAATTCCTTTAATTAACC
1 CTGCATTGTCGCTGGTCCTCGAACTCGTGACCTCTAAGAATCAACAACAATTCCTTTAATTAACC
102218 ACTGAGGTAAGTTAGTTTATGTTCTACATTTACTTCTATTATACCAAAATAATACTATTTTTATT
66 ACTGAGGTAAGTTAGTTTATGTTCTACATTTACTTCTATTATACCAAAATAATACTATTTTTATT
*
102283 TTTAATTTCCTAATATATATGGGTAAGCTACAATTTTGATATATGAACATTACTCTCTCTCATAT
131 TTTAATTTCCTAATATATATGGGTAAGCTACAAGTTTGATATATGAACATTACTCTCTCTCATAT
102348 TTCACTCATCGTACTTACAATTTTTTCAATTTAATCACTGAACTTTTTAGATT
196 TTCACTCATCGTACTTACAATTTTTTCAATTTAATCACTGAACTTTTTAGATT
102401 CTGCATTGTCGCTGGTCCTCGAACTCGTGACCTCTAAGAATCAACAACAATTCCTTTAATTAACC
1 CTGCATTGTCGCTGGTCCTCGAACTCGTGACCTCTAAGAATCAACAACAATTCCTTTAATTAACC
102466 ACTGAGGTAAGTTAGTTTATGTTCTACATTTACTTCTATTATACCAAAATAATACTATTTTTATT
66 ACTGAGGTAAGTTAGTTTATGTTCTACATTTACTTCTATTATACCAAAATAATACTATTTTTATT
102531 TTTAATTTCCTAATATATATGGGTAAGCTACAAGTTTGATATATGAACATTACTCTCTCTCATAT
131 TTTAATTTCCTAATATATATGGGTAAGCTACAAGTTTGATATATGAACATTACTCTCTCTCATAT
102596 TTCACTCATCGTACTTACAATTTTTTCAATTTAATCACTGAACTTTTTAGATT
196 TTCACTCATCGTACTTACAATTTTTTCAATTTAATCACTGAACTTTTTAGATT
102649 GAATTTTTAT
Statistics
Matches: 246, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
248 246 1.00
ACGTcount: A:0.30, C:0.19, G:0.10, T:0.41
Consensus pattern (248 bp):
CTGCATTGTCGCTGGTCCTCGAACTCGTGACCTCTAAGAATCAACAACAATTCCTTTAATTAACC
ACTGAGGTAAGTTAGTTTATGTTCTACATTTACTTCTATTATACCAAAATAATACTATTTTTATT
TTTAATTTCCTAATATATATGGGTAAGCTACAAGTTTGATATATGAACATTACTCTCTCTCATAT
TTCACTCATCGTACTTACAATTTTTTCAATTTAATCACTGAACTTTTTAGATT
Found at i:117849 original size:11 final size:11
Alignment explanation
Indices: 117833--117859 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
117823 AATCATACTA
117833 ATTTTTTTTGT
1 ATTTTTTTTGT
117844 ATTTTTTTTGT
1 ATTTTTTTTGT
117855 ATTTT
1 ATTTT
117860 CTGATTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.11, C:0.00, G:0.07, T:0.81
Consensus pattern (11 bp):
ATTTTTTTTGT
Found at i:119245 original size:19 final size:19
Alignment explanation
Indices: 119194--119252 Score: 64
Period size: 19 Copynumber: 3.0 Consensus size: 19
119184 TACTTTGGAA
* *
119194 AAATATTTTAATTTGTTATT
1 AAATATTTTATTTTATT-TT
* *
119214 AGGATATTCTATTTTATTTT
1 A-AATATTTTATTTTATTTT
119234 AAATATTTTATTTTATTTT
1 AAATATTTTATTTTATTTT
119253 TAGGGAGTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
19 16 0.50
20 4 0.12
21 12 0.38
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.63
Consensus pattern (19 bp):
AAATATTTTATTTTATTTT
Found at i:121985 original size:17 final size:18
Alignment explanation
Indices: 121963--122003 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
121953 GTCCAGAATG
121963 ACCACTATGT-CCGAAGA
1 ACCACTATGTCCCGAAGA
*
121980 ACCACTATGTCCCGAAGG
1 ACCACTATGTCCCGAAGA
121998 ACCACT
1 ACCACT
122004 GATAATCCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 10 0.45
18 12 0.55
ACGTcount: A:0.32, C:0.34, G:0.17, T:0.17
Consensus pattern (18 bp):
ACCACTATGTCCCGAAGA
Found at i:136080 original size:22 final size:22
Alignment explanation
Indices: 136035--136094 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 22
136025 GATATATAGT
* * *
136035 ATACAAAGGTCATTCGAGATAA
1 ATACATAGGTCACTCGAGACAA
*
136057 ATACATAGGTCACTCGGGACAA
1 ATACATAGGTCACTCGAGACAA
* *
136079 ATTTCATATGTCACTC
1 A-TACATAGGTCACTC
136095 AGTGGGACTT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
22 19 0.61
23 12 0.39
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.27
Consensus pattern (22 bp):
ATACATAGGTCACTCGAGACAA
Found at i:136466 original size:28 final size:27
Alignment explanation
Indices: 136410--136466 Score: 62
Period size: 28 Copynumber: 2.0 Consensus size: 27
136400 AATCAGATGT
*
136410 TGATTAGAAGAATAGATATAAGAGGATA
1 TGATTAGAAGAATAAATATAAGA-GATA
*
136438 TGATTATAAGATATAAATGATAAGA-ATA
1 TGATTAGAAGA-ATAAAT-ATAAGAGATA
136466 T
1 T
136467 TGTTGGTGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
28 14 0.56
29 5 0.20
30 6 0.24
ACGTcount: A:0.51, C:0.00, G:0.19, T:0.30
Consensus pattern (27 bp):
TGATTAGAAGAATAAATATAAGAGATA
Found at i:141688 original size:21 final size:22
Alignment explanation
Indices: 141664--141706 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
141654 CAGTTTGTAG
141664 TAATTTGA-TCTTTATGACATA
1 TAATTTGAGTCTTTATGACATA
*
141685 TAATTTTATGTCTTTATGACAT
1 TAATTTGA-GTCTTTATGACAT
141707 GTTTTCCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
23 12 0.63
ACGTcount: A:0.30, C:0.09, G:0.09, T:0.51
Consensus pattern (22 bp):
TAATTTGAGTCTTTATGACATA
Found at i:142097 original size:14 final size:14
Alignment explanation
Indices: 142073--142106 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
142063 ATTATAGGAA
142073 ACATG-TCATAATT
1 ACATGTTCATAATT
142086 ACATGTTCATAATT
1 ACATGTTCATAATT
142100 ACATGTT
1 ACATGTT
142107 TAGTTTACCG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.25
14 15 0.75
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (14 bp):
ACATGTTCATAATT
Found at i:143980 original size:26 final size:25
Alignment explanation
Indices: 143944--143994 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
143934 ATTTGAATTT
*
143944 TTTAACTTTATGTATTTGAT-ATTTTA
1 TTTAAATTTATG-A-TTGATCATTTTA
143970 TTTAAATTTATGATTGATCATTTTA
1 TTTAAATTTATGATTGATCATTTTA
143995 ATAATTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 5 0.22
25 7 0.30
26 11 0.48
ACGTcount: A:0.29, C:0.04, G:0.08, T:0.59
Consensus pattern (25 bp):
TTTAAATTTATGATTGATCATTTTA
Found at i:146094 original size:30 final size:31
Alignment explanation
Indices: 146055--146113 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
146045 TCGGGTATCA
*
146055 GATCGGGTCAAAA-CGGATCGGTTAGTTTCG
1 GATCGGGTCAAAATCAGATCGGTTAGTTTCG
* *
146085 GATCTGGTCAAAATCAGATCGGTTGGTTT
1 GATCGGGTCAAAATCAGATCGGTTAGTTT
146114 TCGTGTCGGG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 12 0.48
31 13 0.52
ACGTcount: A:0.24, C:0.15, G:0.31, T:0.31
Consensus pattern (31 bp):
GATCGGGTCAAAATCAGATCGGTTAGTTTCG
Found at i:147203 original size:210 final size:207
Alignment explanation
Indices: 146845--147258 Score: 753
Period size: 210 Copynumber: 2.0 Consensus size: 207
146835 ATTTGCCATG
146845 TCTAATTGCATGCCCCTCGCACTAGGATTCCAAGATAGATCAAGGGTGACCTCAATTATTCTTCT
1 TCTAATTGCATGCCCCTCGCACTAGGATTCCAAGATAGATCAAGGGTGACCTCAATTATTCTTCT
146910 AATTTTTTTATATTTTTTATTTATAATATTTTCCCCTAACATAAGGTTTTATGTTTGACCTGATC
66 AATTTTTTTATATTTTTTATTTATAATATTTTCCCCTAACATAAGGTTTTATGTTTGACCTGATC
146975 TAGACCTGTCAAATTTGACCCGAATCCGATTACCTGAATCG-TACCCAAAATAGACCAGAATATG
131 TAGACCTGTCAAATTTGACCCGAATCCGATTACCTGAATCGATACCCAAAATAGACCAGAATATG
147039 ATGACCCAATTT
196 ATGACCCAATTT
147051 TCTAATTGCATG-CCCTCGCACTAGGATT-CAATGATAGATCAAGGGGTGACACTCATAATTATT
1 TCTAATTGCATGCCCCTCGCACTAGGATTCCAA-GATAGATCAA-GGGTGAC-CTC--AATTATT
147114 CTTCTAATTTTTTTATATTTTTTATTTATAATATTTTCCCCCTAACATAAGGTTTTATGTTTGAC
61 CTTCTAATTTTTTTATATTTTTTATTTATAATATTTT-CCCCTAACATAAGGTTTTATGTTTGAC
147179 CTGATCTAGACCTGTCAAATTTGACCCGAATCCGATTACCTGAATCGATACCCAAAATAGACCAG
125 CTGATCTAGACCTGTCAAATTTGACCCGAATCCGATTACCTGAATCGATACCCAAAATAGACCAG
147244 AATATGATGACCCAA
190 AATATGATGACCCAA
147259 ATTTAACCCG
Statistics
Matches: 201, Mismatches: 0, Indels: 9
0.96 0.00 0.04
Matches are distributed among these distances:
204 3 0.01
205 26 0.13
206 19 0.09
207 3 0.01
209 44 0.22
210 74 0.37
211 32 0.16
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (207 bp):
TCTAATTGCATGCCCCTCGCACTAGGATTCCAAGATAGATCAAGGGTGACCTCAATTATTCTTCT
AATTTTTTTATATTTTTTATTTATAATATTTTCCCCTAACATAAGGTTTTATGTTTGACCTGATC
TAGACCTGTCAAATTTGACCCGAATCCGATTACCTGAATCGATACCCAAAATAGACCAGAATATG
ATGACCCAATTT
Found at i:164895 original size:15 final size:15
Alignment explanation
Indices: 164872--164904 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
164862 CGTAGGACTC
164872 CTACATCCCGAAGGA
1 CTACATCCCGAAGGA
*
164887 CTACGTCCCGAAGGA
1 CTACATCCCGAAGGA
164902 CTA
1 CTA
164905 TTATACCCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.30, C:0.33, G:0.21, T:0.15
Consensus pattern (15 bp):
CTACATCCCGAAGGA
Found at i:165468 original size:19 final size:19
Alignment explanation
Indices: 165444--165491 Score: 96
Period size: 19 Copynumber: 2.5 Consensus size: 19
165434 TATTGTTGTG
165444 ATGCATCGATACACTCCTT
1 ATGCATCGATACACTCCTT
165463 ATGCATCGATACACTCCTT
1 ATGCATCGATACACTCCTT
165482 ATGCATCGAT
1 ATGCATCGAT
165492 GCACCAATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.31
Consensus pattern (19 bp):
ATGCATCGATACACTCCTT
Found at i:174917 original size:31 final size:31
Alignment explanation
Indices: 174836--174953 Score: 114
Period size: 31 Copynumber: 3.8 Consensus size: 31
174826 AAGGTGACCC
* *
174836 TTGGGTAGGCTCTTAGGCCCCGAGATGTTCCA
1 TTGGGTAGGCTCTAAGGCCCCAAGATGTT-CA
* * *
174868 TTGGGTAGGTTCTTAGGCCCCAAGGTGCTTCA
1 TTGGGTAGGCTCTAAGGCCCCAAGATG-TTCA
* * *
174900 TT-GGTAGGATCTAAGGCCCAAAGATATTTC-
1 TTGGGTAGGCTCTAAGGCCCCAAGAT-GTTCA
*
174930 TTGGGTAGGCTCTAAGGCCTCAAG
1 TTGGGTAGGCTCTAAGGCCCCAAG
174954 GTACTCCCTT
Statistics
Matches: 72, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
30 2 0.03
31 40 0.56
32 28 0.39
33 2 0.03
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (31 bp):
TTGGGTAGGCTCTAAGGCCCCAAGATGTTCA
Found at i:177174 original size:21 final size:21
Alignment explanation
Indices: 177148--177190 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
177138 GATACTCCTA
177148 GGTCAGTATTGATAGTAATAG
1 GGTCAGTATTGATAGTAATAG
177169 GGTCAGTATTGATAGTAATAG
1 GGTCAGTATTGATAGTAATAG
177190 G
1 G
177191 TTCAATATCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.05, G:0.30, T:0.33
Consensus pattern (21 bp):
GGTCAGTATTGATAGTAATAG
Found at i:177203 original size:21 final size:21
Alignment explanation
Indices: 177148--177203 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
177138 GATACTCCTA
* *
177148 GGTCAGTATTGATAGTAATAG
1 GGTCAATATCGATAGTAATAG
* *
177169 GGTCAGTATTGATAGTAATAG
1 GGTCAATATCGATAGTAATAG
*
177190 GTTCAATATCGATA
1 GGTCAATATCGATA
177204 CCAACTCAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.34, C:0.07, G:0.25, T:0.34
Consensus pattern (21 bp):
GGTCAATATCGATAGTAATAG
Found at i:178778 original size:8 final size:8
Alignment explanation
Indices: 178765--178797 Score: 66
Period size: 8 Copynumber: 4.1 Consensus size: 8
178755 CAGAGTGGAT
178765 AAAAGGGA
1 AAAAGGGA
178773 AAAAGGGA
1 AAAAGGGA
178781 AAAAGGGA
1 AAAAGGGA
178789 AAAAGGGA
1 AAAAGGGA
178797 A
1 A
178798 GGTAGTGCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (8 bp):
AAAAGGGA
Found at i:193957 original size:31 final size:31
Alignment explanation
Indices: 193915--193991 Score: 118
Period size: 31 Copynumber: 2.5 Consensus size: 31
193905 GAAAATTGAA
* *
193915 AGTTTAAGTACTAAAGTAGACTAAAACTAAT
1 AGTTTAGGTACTAAAATAGACTAAAACTAAT
*
193946 AGTTTAGGTACTAAAATAGATTAAAACTAAT
1 AGTTTAGGTACTAAAATAGACTAAAACTAAT
*
193977 AATTTAGGTACTAAA
1 AGTTTAGGTACTAAA
193992 TACATAATTT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.48, C:0.08, G:0.13, T:0.31
Consensus pattern (31 bp):
AGTTTAGGTACTAAAATAGACTAAAACTAAT
Found at i:194268 original size:13 final size:14
Alignment explanation
Indices: 194250--194278 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
194240 ATATATTTTA
194250 TATAAAATTTA-TT
1 TATAAAATTTAGTT
194263 TATAAAATTTAGTT
1 TATAAAATTTAGTT
194277 TA
1 TA
194279 ATAATAACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (14 bp):
TATAAAATTTAGTT
Found at i:194699 original size:22 final size:21
Alignment explanation
Indices: 194660--194700 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
194650 CATCAATGTT
*
194660 TAAAAAATAATTTTTTTCAAA
1 TAAAAAATAATTTCTTTCAAA
194681 TAAAAAATAATTTACTTTCA
1 TAAAAAATAATTT-CTTTCA
194701 CGACGGATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.41
Consensus pattern (21 bp):
TAAAAAATAATTTCTTTCAAA
Found at i:195038 original size:21 final size:21
Alignment explanation
Indices: 195012--195052 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
195002 CAGTAAAAAA
195012 TTACCTAAAACATTATTATTT
1 TTACCTAAAACATTATTATTT
**
195033 TTACCTAAAATGTTATTATT
1 TTACCTAAAACATTATTATT
195053 GAGGCTTTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.37, C:0.12, G:0.02, T:0.49
Consensus pattern (21 bp):
TTACCTAAAACATTATTATTT
Found at i:201222 original size:17 final size:17
Alignment explanation
Indices: 201200--201241 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
201190 AATATTTTTT
201200 TATATTTTTACTAATAA
1 TATATTTTTACTAATAA
**
201217 TATATTTTTACTTTTAA
1 TATATTTTTACTAATAA
201234 TATATTTT
1 TATATTTT
201242 ATAAATTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (17 bp):
TATATTTTTACTAATAA
Found at i:202109 original size:17 final size:18
Alignment explanation
Indices: 202089--202122 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
202079 TTAATCTAAC
202089 AATTTAAAAA-TATATAA
1 AATTTAAAAATTATATAA
202106 AATTTAAAAATTATATA
1 AATTTAAAAATTATATA
202123 TGTTATTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
AATTTAAAAATTATATAA
Found at i:204451 original size:18 final size:19
Alignment explanation
Indices: 204430--204465 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
204420 TTGTAAAATA
*
204430 ATTCTTTTA-TATTTTATG
1 ATTCTATTATTATTTTATG
204448 ATTCTATTATTATTTTAT
1 ATTCTATTATTATTTTAT
204466 TTTAAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.25, C:0.06, G:0.03, T:0.67
Consensus pattern (19 bp):
ATTCTATTATTATTTTATG
Found at i:207351 original size:2 final size:2
Alignment explanation
Indices: 207344--207381 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
207334 ATGTCACATC
207344 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
207382 CTTTTTTTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:208053 original size:57 final size:58
Alignment explanation
Indices: 207932--208265 Score: 530
Period size: 57 Copynumber: 5.8 Consensus size: 58
207922 TTTCCCATAT
* * *
207932 GGAAATTCATACACTTAGTATGAATGTCTTAACAATTTGCACACAAAGTGCCCAATAC
1 GGAAATTCATACACTTAGTATGAATTTCTTAACATTTTGCACACGAAGTGCCCAATAC
* *
207990 GGAAATTCA-ATCACTTAGTATGAATTTATTAAC-TTTTGCACACGAAGTGCCTAATAC
1 GGAAATTCATA-CACTTAGTATGAATTTCTTAACATTTTGCACACGAAGTGCCCAATAC
*
208047 GGAAATTCATACACTTAGTATGAATTTCTTAAC-TTTTGCATACGAAGTGCCCAATAC
1 GGAAATTCATACACTTAGTATGAATTTCTTAACATTTTGCACACGAAGTGCCCAATAC
208104 GGAAATTCATACACTTAGTATGAATTTCTTAACATTTTGCACACGAAGTGCCCAATAC
1 GGAAATTCATACACTTAGTATGAATTTCTTAACATTTTGCACACGAAGTGCCCAATAC
** *
208162 AAAAATTCATATACTTAGTATGAATTTCTTAACATTTTTGCACACGAAGTGCCCAATAC
1 GGAAATTCATACACTTAGTATGAATTTCTTAACA-TTTTGCACACGAAGTGCCCAATAC
*
208221 AGAAATTCATACACTTAGTATGAATTTCTTAACATTTTTGCACAC
1 GGAAATTCATACACTTAGTATGAATTTCTTAACA-TTTTGCACAC
208266 TTAGTGCCAT
Statistics
Matches: 258, Mismatches: 14, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
57 107 0.41
58 84 0.33
59 67 0.26
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.33
Consensus pattern (58 bp):
GGAAATTCATACACTTAGTATGAATTTCTTAACATTTTGCACACGAAGTGCCCAATAC
Found at i:208151 original size:115 final size:116
Alignment explanation
Indices: 207932--208265 Score: 530
Period size: 115 Copynumber: 2.9 Consensus size: 116
207922 TTTCCCATAT
* * *
207932 GGAAATTCATACACTTAGTATGAATGTCTTAACAATTTGCACACAAAGTGCCCAATACGGAAATT
1 GGAAATTCATACACTTAGTATGAATTTCTTAACATTTTGCACACGAAGTGCCCAATACGGAAATT
* *
207997 CA-ATCACTTAGTATGAATTTATTAAC-TTTTGCACACGAAGTGCCTAATAC
66 CATA-CACTTAGTATGAATTTCTTAACATTTTGCACACGAAGTGCCCAATAC
*
208047 GGAAATTCATACACTTAGTATGAATTTCTTAAC-TTTTGCATACGAAGTGCCCAATACGGAAATT
1 GGAAATTCATACACTTAGTATGAATTTCTTAACATTTTGCACACGAAGTGCCCAATACGGAAATT
208111 CATACACTTAGTATGAATTTCTTAACATTTTGCACACGAAGTGCCCAATAC
66 CATACACTTAGTATGAATTTCTTAACATTTTGCACACGAAGTGCCCAATAC
** * *
208162 AAAAATTCATATACTTAGTATGAATTTCTTAACATTTTTGCACACGAAGTGCCCAATACAGAAAT
1 GGAAATTCATACACTTAGTATGAATTTCTTAACA-TTTTGCACACGAAGTGCCCAATACGGAAAT
208227 TCATACACTTAGTATGAATTTCTTAACATTTTTGCACAC
65 TCATACACTTAGTATGAATTTCTTAACA-TTTTGCACAC
208266 TTAGTGCCAT
Statistics
Matches: 203, Mismatches: 11, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
114 51 0.25
115 86 0.42
117 56 0.28
118 10 0.05
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.33
Consensus pattern (116 bp):
GGAAATTCATACACTTAGTATGAATTTCTTAACATTTTGCACACGAAGTGCCCAATACGGAAATT
CATACACTTAGTATGAATTTCTTAACATTTTGCACACGAAGTGCCCAATAC
Found at i:208622 original size:20 final size:21
Alignment explanation
Indices: 208597--208645 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
208587 TGGCTCTTAA
208597 GTATCGACAC-CCCTACCATG
1 GTATCGACACACCCTACCATG
* *
208617 GTATCGATACTACCCTACTATG
1 GTATCGACAC-ACCCTACCATG
208639 GTATCGA
1 GTATCGA
208646 TATCCCCTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 9 0.36
22 16 0.64
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.27
Consensus pattern (21 bp):
GTATCGACACACCCTACCATG
Found at i:208715 original size:20 final size:21
Alignment explanation
Indices: 208690--208745 Score: 60
Period size: 22 Copynumber: 2.7 Consensus size: 21
208680 CGATGTGGCC
208690 TGGTATCGATACCCT-TACCA
1 TGGTATCGATACCCTATACCA
* * *
208710 TGGTATCAATACTACTATACTA
1 TGGTATCGATAC-CCTATACCA
*
208732 TGGTACCGATACCC
1 TGGTATCGATACCC
208746 CCTTCCAGTA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
20 11 0.39
21 3 0.11
22 14 0.50
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (21 bp):
TGGTATCGATACCCTATACCA
Found at i:208760 original size:95 final size:95
Alignment explanation
Indices: 208597--208817 Score: 336
Period size: 95 Copynumber: 2.3 Consensus size: 95
208587 TGGCTCTTAA
* * * * *
208597 GTATCGACACCCCTACCATGGTATCGATACTACCCTACTATGGTATCGATATCCCCTTCCGTTAT
1 GTATCGATACCCTTACCATGGTATCGATACTACCATACTATGGTACCGATACCCCCTTCCGTTAT
208662 CGATACCAATTTTAGATTCGATGTGGCCTG
66 CGATACCAATTTTAGATTCGATGTGGCCTG
* *
208692 GTATCGATACCCTTACCATGGTATCAATACTACTATACTATGGTACCGATACCCCCTTCCAG-TA
1 GTATCGATACCCTTACCATGGTATCGATACTACCATACTATGGTACCGATACCCCCTTCC-GTTA
* *
208756 TCGATACCAATTTTAGGTTCGATGTTGCCTG
65 TCGATACCAATTTTAGATTCGATGTGGCCTG
*
208787 ATATCGATACCCTTACCATGGTATCGATACT
1 GTATCGATACCCTTACCATGGTATCGATACT
208818 GATTGAATCA
Statistics
Matches: 114, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
95 113 0.99
96 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (95 bp):
GTATCGATACCCTTACCATGGTATCGATACTACCATACTATGGTACCGATACCCCCTTCCGTTAT
CGATACCAATTTTAGATTCGATGTGGCCTG
Found at i:212300 original size:18 final size:18
Alignment explanation
Indices: 212277--212354 Score: 75
Period size: 18 Copynumber: 3.9 Consensus size: 18
212267 ATCTGATATT
212277 TGGTCCTTCGGGACATAA
1 TGGTCCTTCGGGACATAA
212295 TGGTCCTTCGGGACATATGTGATA
1 TGGTCCTTCGGGAC--A--T-A-A
*
212319 TTTGGTCCTTCGGGACATAG
1 --TGGTCCTTCGGGACATAA
212339 TGGTCCTTCGGGACAT
1 TGGTCCTTCGGGACAT
212355 TTCTACACGG
Statistics
Matches: 51, Mismatches: 1, Indels: 16
0.75 0.01 0.24
Matches are distributed among these distances:
18 30 0.59
20 1 0.02
21 1 0.02
22 2 0.04
23 1 0.02
24 2 0.04
26 14 0.27
ACGTcount: A:0.18, C:0.21, G:0.29, T:0.32
Consensus pattern (18 bp):
TGGTCCTTCGGGACATAA
Found at i:212318 original size:44 final size:44
Alignment explanation
Indices: 212251--212354 Score: 172
Period size: 44 Copynumber: 2.4 Consensus size: 44
212241 TCTGAAGGAG
* *
212251 TGGTCTTTCGGGAAATATCTGATATTTGGTCCTTCGGGACATAA
1 TGGTCCTTCGGGACATATCTGATATTTGGTCCTTCGGGACATAA
* *
212295 TGGTCCTTCGGGACATATGTGATATTTGGTCCTTCGGGACATAG
1 TGGTCCTTCGGGACATATCTGATATTTGGTCCTTCGGGACATAA
212339 TGGTCCTTCGGGACAT
1 TGGTCCTTCGGGACAT
212355 TTCTACACGG
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 56 1.00
ACGTcount: A:0.19, C:0.18, G:0.28, T:0.35
Consensus pattern (44 bp):
TGGTCCTTCGGGACATATCTGATATTTGGTCCTTCGGGACATAA
Found at i:218742 original size:18 final size:18
Alignment explanation
Indices: 218719--218755 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
218709 TCATATAATG
218719 CTACATTTTTTCTATTCT
1 CTACATTTTTTCTATTCT
218737 CTACATTTTTTCTATTCT
1 CTACATTTTTTCTATTCT
218755 C
1 C
218756 ATTGCACAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.24, G:0.00, T:0.59
Consensus pattern (18 bp):
CTACATTTTTTCTATTCT
Found at i:221773 original size:24 final size:24
Alignment explanation
Indices: 221725--221771 Score: 87
Period size: 23 Copynumber: 2.0 Consensus size: 24
221715 ATTCGATGCC
221725 CCCTTAGCCCCTCTTTTTGACTTT
1 CCCTTAGCCCCTCTTTTTGACTTT
221749 CCCTTAGCCCC-CTTTTTGACTTT
1 CCCTTAGCCCCTCTTTTTGACTTT
221772 TCTAACAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 12 0.52
24 11 0.48
ACGTcount: A:0.09, C:0.38, G:0.09, T:0.45
Consensus pattern (24 bp):
CCCTTAGCCCCTCTTTTTGACTTT
Found at i:223767 original size:3 final size:3
Alignment explanation
Indices: 223759--223787 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
223749 GAACCAGTAT
223759 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
223788 TATTTATTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:244009 original size:20 final size:20
Alignment explanation
Indices: 243984--244024 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
243974 TAAAGTATTT
*
243984 AAAAAAT-ATTTTTAATCAGA
1 AAAAAATAATATTTAAT-AGA
244004 AAAAAATAATATTTAATAGA
1 AAAAAATAATATTTAATAGA
244024 A
1 A
244025 TAACTTGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (20 bp):
AAAAAATAATATTTAATAGA
Found at i:244528 original size:25 final size:25
Alignment explanation
Indices: 244500--244547 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
244490 ATTAGCGGCT
244500 AGTGGTCTGATTGA-ACAAATTAATA
1 AGTGGTCTGATTGACA-AAATTAATA
*
244525 AGTGGTGTGATTGACAAAATTAA
1 AGTGGTCTGATTGACAAAATTAA
244548 AAGATATGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 20 0.95
26 1 0.05
ACGTcount: A:0.40, C:0.06, G:0.23, T:0.31
Consensus pattern (25 bp):
AGTGGTCTGATTGACAAAATTAATA
Found at i:248773 original size:36 final size:35
Alignment explanation
Indices: 248701--248779 Score: 90
Period size: 37 Copynumber: 2.3 Consensus size: 35
248691 CAACTTTAAA
* *
248701 AAAAATGATTTTAAAGTTTGGTAAATGTTTCTTTG
1 AAAAATGATTTTAAAATTTGGTAAATGTTTCGTTG
* *
248736 AAAAATAGTTTTTCAAAATTTGGTAGATGTTT-GTTG
1 AAAAAT-GATTTT-AAAATTTGGTAAATGTTTCGTTG
248772 -AAAATGAT
1 AAAAATGAT
248780 AATGGGATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
34 2 0.05
35 11 0.30
36 8 0.22
37 16 0.43
ACGTcount: A:0.37, C:0.03, G:0.18, T:0.43
Consensus pattern (35 bp):
AAAAATGATTTTAAAATTTGGTAAATGTTTCGTTG
Found at i:253230 original size:36 final size:37
Alignment explanation
Indices: 253177--253259 Score: 114
Period size: 37 Copynumber: 2.2 Consensus size: 37
253167 TGGCAACCAA
*
253177 CTTTGAAAAAAT-GGTTTTCAAAGTTTGGTAAATGTTT
1 CTTT-AAAAAATAGTTTTTCAAAGTTTGGTAAATGTTT
*
253214 CTTTAAAAAATAGTTTTTCAAAGTTTGGTAGATGTTT
1 CTTTAAAAAATAGTTTTTCAAAGTTTGGTAAATGTTT
* *
253251 GTTGAAAAA
1 CTTTAAAAA
253260 TGATAATGGG
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
36 7 0.17
37 34 0.83
ACGTcount: A:0.35, C:0.05, G:0.18, T:0.42
Consensus pattern (37 bp):
CTTTAAAAAATAGTTTTTCAAAGTTTGGTAAATGTTT
Found at i:274047 original size:30 final size:30
Alignment explanation
Indices: 273946--274056 Score: 95
Period size: 30 Copynumber: 3.7 Consensus size: 30
273936 AAGTAAGAAT
273946 ATAAACTTAAAAGGACTAAAATAGC-AAACAC
1 ATAAACTT-AAAGGACTAAAATAGCTAAA-AC
* * *
273977 ATAAACTCAAAGGACCAAAATAG-TACAA-
1 ATAAACTTAAAGGACTAAAATAGCTAAAAC
* * *
274005 ATAGGAATTTAAAGGACTAATATGGCTAAAAC
1 ATA--AACTTAAAGGACTAAAATAGCTAAAAC
274037 ATAAACTTAAATGG-CTAAAA
1 ATAAACTTAAA-GGACTAAAA
274057 CAATAATTAC
Statistics
Matches: 63, Mismatches: 11, Indels: 13
0.72 0.13 0.15
Matches are distributed among these distances:
28 3 0.05
29 1 0.02
30 43 0.68
31 13 0.21
32 3 0.05
ACGTcount: A:0.54, C:0.14, G:0.13, T:0.20
Consensus pattern (30 bp):
ATAAACTTAAAGGACTAAAATAGCTAAAAC
Found at i:276053 original size:20 final size:20
Alignment explanation
Indices: 276025--276067 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
276015 AAAAAGTAAT
276025 ATATGTGAATGGGTTAAAGC
1 ATATGTGAATGGGTTAAAGC
*
276045 ATATTTGAATGGGTTAAAGC
1 ATATGTGAATGGGTTAAAGC
276065 ATA
1 ATA
276068 ATCTATTGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.37, C:0.05, G:0.26, T:0.33
Consensus pattern (20 bp):
ATATGTGAATGGGTTAAAGC
Found at i:277354 original size:93 final size:93
Alignment explanation
Indices: 277173--277531 Score: 456
Period size: 93 Copynumber: 3.8 Consensus size: 93
277163 TAATTAAATC
* * *
277173 GAAATTTATTTTAAAATTATTAACCGAACCAAATTAACCAATTTTTTTTCTTTAA-CATTAATCG
1 GAAATTTATTTGAAAATTATTAACCGAACAAAATTAACCGA--TTTTTTCTTTAACCATTAATCG
* *
277237 AACCGAAATTATTTGATCGTTAATCGAACT
64 AACCAAAATTATTTGACCGTTAATCGAACT
**
277267 GAAATTTATTTGAAAATTATTAACCGAACAAAATTAATTGAATTTTTTCTTTAA-CATTAATCGA
1 GAAATTTATTTGAAAATTATTAACCGAACAAAATTAACCG-ATTTTTTCTTTAACCATTAATCGA
*
277331 ACCAAAATTATTTGACCGTTAATCGAACC
65 ACCAAAATTATTTGACCGTTAATCGAACT
* * *
277360 GAAATTTATTTGAAAATTATTAACTGAACCAAATCAACCGATTTTTTCTTTAACCATTAATCGAA
1 GAAATTTATTTGAAAATTATTAACCGAACAAAATTAACCGATTTTTTCTTTAACCATTAATCGAA
*
277425 CCGAAATTATTTGACCGTTAATCGAA-T
66 CCAAAATTATTTGACCGTTAATCGAACT
* * * * * * * *
277452 CAAAATTTATTTAAAAAATATTAACCGAATAAAA-TAAACTATTTTTTCCTTAACCGTTAATCGA
1 -GAAATTTATTTGAAAATTATTAACCGAACAAAATTAACCGATTTTTTCTTTAACCATTAATCGA
*
277516 ACCGAAATTTATTTGA
65 ACC-AAAATTATTTGA
277532 AAATTATTAA
Statistics
Matches: 233, Mismatches: 28, Indels: 9
0.86 0.10 0.03
Matches are distributed among these distances:
92 41 0.18
93 156 0.67
94 35 0.15
95 1 0.00
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.37
Consensus pattern (93 bp):
GAAATTTATTTGAAAATTATTAACCGAACAAAATTAACCGATTTTTTCTTTAACCATTAATCGAA
CCAAAATTATTTGACCGTTAATCGAACT
Found at i:277476 original size:186 final size:186
Alignment explanation
Indices: 277158--277531 Score: 522
Period size: 186 Copynumber: 2.0 Consensus size: 186
277148 TTTTTCTTTA
* * * *
277158 ACCGTTAATTAAATCGAAATTTATTTTAAAATTATTAACCGAACCAAATTAACCAATTTTTTTTC
1 ACCGTTAATCAAACCGAAATTTATTTGAAAATTATTAACCGAACCAAATCAACCAA-TTTTTTTC
* * * *
277223 TTTAACATTAATCGAACCGAAATTATTTGATCGTTAATCGAACTGAAATTTATTTGAAAATTATT
65 TTTAACATTAATCGAACCGAAATTATTTGACCGTTAATCGAACTAAAATTTATTTAAAAAATATT
* * *
277288 AACCGAACAAAATTAATTGAATTTTTTCTTTAA-CATTAATCGAACC-AAAATTATTTG
130 AACCGAACAAAATAAACT--ATTTTTTCCTTAACCATTAATCGAACCGAAAATTATTTG
* * *
277345 ACCGTTAATCGAACCGAAATTTATTTGAAAATTATTAACTGAACCAAATCAACCGA-TTTTTTCT
1 ACCGTTAATCAAACCGAAATTTATTTGAAAATTATTAACCGAACCAAATCAACCAATTTTTTTCT
277409 TTAACCATTAATCGAACCGAAATTATTTGACCGTTAATCGAA-TCAAAATTTATTTAAAAAATAT
66 TTAA-CATTAATCGAACCGAAATTATTTGACCGTTAATCGAACT-AAAATTTATTTAAAAAATAT
* * *
277473 TAACCGAATAAAATAAACTATTTTTTCCTTAACCGTTAATCGAACCGAAATTTATTTG
129 TAACCGAACAAAATAAACTATTTTTTCCTTAACCATTAATCGAACCGAAAATTATTTG
277531 A
1 A
277532 AAATTATTAA
Statistics
Matches: 166, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
184 12 0.07
185 25 0.15
186 80 0.48
187 49 0.30
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.37
Consensus pattern (186 bp):
ACCGTTAATCAAACCGAAATTTATTTGAAAATTATTAACCGAACCAAATCAACCAATTTTTTTCT
TTAACATTAATCGAACCGAAATTATTTGACCGTTAATCGAACTAAAATTTATTTAAAAAATATTA
ACCGAACAAAATAAACTATTTTTTCCTTAACCATTAATCGAACCGAAAATTATTTG
Found at i:277591 original size:26 final size:26
Alignment explanation
Indices: 277562--277624 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
277552 TTAACCAAAA
*
277562 AAAATTCTTTAACCATTAATCGAACC
1 AAAATTATTTAACCATTAATCGAACC
* *
277588 AAAATTATTTGACCGTTAATCGAACC
1 AAAATTATTTAACCATTAATCGAACC
*
277614 GAAATTTATTT
1 -AAAATTATTT
277625 GAAAATTATT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 23 0.72
27 9 0.28
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (26 bp):
AAAATTATTTAACCATTAATCGAACC
Found at i:277608 original size:161 final size:162
Alignment explanation
Indices: 277345--277693 Score: 438
Period size: 161 Copynumber: 2.2 Consensus size: 162
277335 AAATTATTTG
** * ****
277345 ACCGTTAATCGAACCGAAATTTATTTGAAAATTATTAACTGAACCAAATCAACCGATTTTTTCTT
1 ACCGTTAATCGAACCGAAATTTATTTGAAAATTATTAACCAAACCAAATCAACCAAAAAATTCTT
* *
277410 TAACCATTAATCGAACCGAAATTATTTGACCGTTAATCGAATCAAAATTTATTTAAAAAATATTA
66 TAACCATTAATCGAACCAAAATTATTTGACCGTTAATCGAACCAAAATTTATTTAAAAAATATTA
* *
277475 ACCGAA-TAAAATAAAC-TA-TTTTTTCCTTA
131 ACCGAACCAAAATAAACAAATTTTTTTCCTTA
* * * *
277504 ACCGTTAATCGAACCGAAATTTATTTGAAAATTATTAACCAAATCGATTTAACCAAAAAAAATTC
1 ACCGTTAATCGAACCGAAATTTATTTGAAAATTATTAACCAAACCAAATCAACC--AAAAAATTC
* * *
277569 TTTAACCATTAATCGAACCAAAATTATTTGACCGTTAATCGAACCGAAATTTATTTGAAAATTAT
64 TTTAACCATTAATCGAACCAAAATTATTTGACCGTTAATCGAACCAAAATTTATTTAAAAAATAT
* * * *
277634 TAATCGAACCAAATTAACCAAATTTTTTTCTTTA
129 TAACCGAACCAAAATAAACAAATTTTTTTCCTTA
*
277668 A-CATTAATCGAACCGAAA-TTATTTGA
1 ACCGTTAATCGAACCGAAATTTATTTGA
277694 CCGTTAATCG
Statistics
Matches: 162, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
159 48 0.30
161 71 0.44
162 15 0.09
163 17 0.10
164 11 0.07
ACGTcount: A:0.42, C:0.16, G:0.08, T:0.34
Consensus pattern (162 bp):
ACCGTTAATCGAACCGAAATTTATTTGAAAATTATTAACCAAACCAAATCAACCAAAAAATTCTT
TAACCATTAATCGAACCAAAATTATTTGACCGTTAATCGAACCAAAATTTATTTAAAAAATATTA
ACCGAACCAAAATAAACAAATTTTTTTCCTTA
Found at i:277726 original size:94 final size:95
Alignment explanation
Indices: 277504--277728 Score: 335
Period size: 95 Copynumber: 2.4 Consensus size: 95
277494 TTTTTCCTTA
* * *
277504 ACCGTTAATCGAACCGAAATTTATTTGAAAATTATTAACCAAATCGATTTAACCAAAAAAAATTC
1 ACCGTTAATCGAACCGAAATTTATTTGAAAATTATTAACCAAACCAAATTAACCAAAAAAAATTC
277569 TTTAACCATTAATCGAACCAAAATTATTTG
66 TTTAACCATTAATCGAACCAAAATTATTTG
* * *****
277599 ACCGTTAATCGAACCGAAATTTATTTGAAAATTATTAATCGAACCAAATTAACCAAATTTTTTTC
1 ACCGTTAATCGAACCGAAATTTATTTGAAAATTATTAACCAAACCAAATTAACCAAAAAAAATTC
*
277664 TTTAA-CATTAATCGAACCGAAATTATTTG
66 TTTAACCATTAATCGAACCAAAATTATTTG
*
277693 ACCGTTAATCGATCCGAAATTTATTTGAAAATTATT
1 ACCGTTAATCGAACCGAAATTTATTTGAAAATTATT
277729 TACCGATTAA
Statistics
Matches: 118, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
94 58 0.49
95 60 0.51
ACGTcount: A:0.41, C:0.16, G:0.08, T:0.35
Consensus pattern (95 bp):
ACCGTTAATCGAACCGAAATTTATTTGAAAATTATTAACCAAACCAAATTAACCAAAAAAAATTC
TTTAACCATTAATCGAACCAAAATTATTTG
Found at i:280671 original size:24 final size:24
Alignment explanation
Indices: 280644--280702 Score: 100
Period size: 24 Copynumber: 2.5 Consensus size: 24
280634 CAAAAATCAA
*
280644 AACAGAATCCAGGTCAGATAGTAT
1 AACAGAATCCAGGTCAGATAGCAT
280668 AACAGAATCCAGGTCAGATAGCAT
1 AACAGAATCCAGGTCAGATAGCAT
*
280692 AACATAATCCA
1 AACAGAATCCA
280703 TGTTAGGTCT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.44, C:0.20, G:0.17, T:0.19
Consensus pattern (24 bp):
AACAGAATCCAGGTCAGATAGCAT
Found at i:287961 original size:20 final size:22
Alignment explanation
Indices: 287928--287976 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
287918 AGAGAATTGA
*
287928 TCCCCCCATGA-GGGAACCGAT
1 TCCCCCCATCAGGGGAACCGAT
*
287949 TCCCCCCA-CAGGGGAATCGAT
1 TCCCCCCATCAGGGGAACCGAT
*
287970 ACCCCCC
1 TCCCCCC
287977 TGGGGTTCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 1 0.04
21 23 0.96
ACGTcount: A:0.22, C:0.45, G:0.20, T:0.12
Consensus pattern (22 bp):
TCCCCCCATCAGGGGAACCGAT
Found at i:292658 original size:23 final size:22
Alignment explanation
Indices: 292631--292690 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 22
292621 AAAGTCAACG
*
292631 GTCAACAGGTTGACTTGGTCAAA
1 GTCAAC-GGTTGACTCGGTCAAA
292654 GTCAACGGTTTGACTCGGTCAAA
1 GTCAACGG-TTGACTCGGTCAAA
292677 GTCAACGAGTTGAC
1 GTCAACG-GTTGAC
292691 CTAGTGAGTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
22 2 0.06
23 31 0.91
24 1 0.03
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (22 bp):
GTCAACGGTTGACTCGGTCAAA
Found at i:294871 original size:28 final size:28
Alignment explanation
Indices: 294831--294924 Score: 95
Period size: 28 Copynumber: 3.4 Consensus size: 28
294821 AGGAATTATG
* *
294831 GTTTCAAGAGAAACCGACTAAAAGATTT
1 GTTTCAAAAGAAACAGACTAAAAGATTT
*
294859 GTTTCAAAAGAAACAGACTCAAAGATTT
1 GTTTCAAAAGAAACAGACTAAAAGATTT
* *
294887 GTTT--AAA-AAACAAACTTAAAGATGATGT
1 GTTTCAAAAGAAACAGAC-TAAA-A-GATTT
294915 GTTTCAAAAG
1 GTTTCAAAAG
294925 CAACTTCTCG
Statistics
Matches: 54, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
25 7 0.13
26 6 0.11
27 1 0.02
28 37 0.69
30 3 0.06
ACGTcount: A:0.46, C:0.12, G:0.16, T:0.27
Consensus pattern (28 bp):
GTTTCAAAAGAAACAGACTAAAAGATTT
Found at i:294907 original size:25 final size:27
Alignment explanation
Indices: 294851--294909 Score: 77
Period size: 25 Copynumber: 2.2 Consensus size: 27
294841 AAACCGACTA
*
294851 AAAGATTTGTTTCAAAAGAAACAGACTC
1 AAAGATTTGTTT-AAAAGAAACAAACTC
*
294879 AAAGATTTGTTT-AAA-AAACAAACTT
1 AAAGATTTGTTTAAAAGAAACAAACTC
294904 AAAGAT
1 AAAGAT
294910 GATGTGTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 14 0.48
26 3 0.10
28 12 0.41
ACGTcount: A:0.51, C:0.10, G:0.12, T:0.27
Consensus pattern (27 bp):
AAAGATTTGTTTAAAAGAAACAAACTC
Found at i:296739 original size:15 final size:15
Alignment explanation
Indices: 296700--296741 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
296690 GTTTCTTGCT
*
296700 TTGTTTTTTTT-TCT
1 TTGTTTTTTTTCTCA
*
296714 TTGTTTCTTTTCTCA
1 TTGTTTTTTTTCTCA
296729 TTGTTTTTTTTCT
1 TTGTTTTTTTTCT
296742 TTGCTATGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 10 0.42
15 14 0.58
ACGTcount: A:0.02, C:0.12, G:0.07, T:0.79
Consensus pattern (15 bp):
TTGTTTTTTTTCTCA
Found at i:301205 original size:31 final size:30
Alignment explanation
Indices: 301170--301227 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 30
301160 TATATTAATT
**
301170 AACAATTTTATTATTTTTGAAGGGACTTTAA
1 AACAATTTTAGAATTTTT-AAGGGACTTTAA
*
301201 AACAATTTTCGAATTTTTAAGGGACTT
1 AACAATTTTAGAATTTTTAAGGGACTT
301228 GATCAAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 9 0.38
31 15 0.62
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (30 bp):
AACAATTTTAGAATTTTTAAGGGACTTTAA
Found at i:304352 original size:33 final size:33
Alignment explanation
Indices: 304302--304429 Score: 150
Period size: 33 Copynumber: 3.9 Consensus size: 33
304292 AGGGAAGCAT
* * *
304302 CATCATTCGAGGCAGTAGGTCCAGGAAAAACAT
1 CATCATTCGAGTCAGTAGGTCCAGGAGAAACAC
* *
304335 CATCATGCGAGTTAGTAGGTCCAGGAGAAACAC
1 CATCATTCGAGTCAGTAGGTCCAGGAGAAACAC
* * *
304368 CTTCATTCAAGTCAGTAGGTCCAAGG-GAATCAC
1 CATCATTCGAGTCAGTAGGTCC-AGGAGAAACAC
* *
304401 CATCATTCGAGTTAGTAGGTCCAAGAGAA
1 CATCATTCGAGTCAGTAGGTCCAGGAGAA
304430 TCCTGTTCAA
Statistics
Matches: 79, Mismatches: 14, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
32 2 0.03
33 74 0.94
34 3 0.04
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (33 bp):
CATCATTCGAGTCAGTAGGTCCAGGAGAAACAC
Found at i:304412 original size:66 final size:66
Alignment explanation
Indices: 304304--304429 Score: 173
Period size: 66 Copynumber: 1.9 Consensus size: 66
304294 GGAAGCATCA
* * *
304304 TCATTCGAGGCAGTAGGTCCAGGAAAAACATCATCATGCGAGTTAGTAGGTCCAGGAGAAACACC
1 TCATTCAAGGCAGTAGGTCCAGGAAAAACACCATCATGCGAGTTAGTAGGTCCAAGAGAAACACC
304369 T
66 T
* * * *
304370 TCATTCAAGTCAGTAGGTCCAAGG-GAATCACCATCATTCGAGTTAGTAGGTCCAAGAGAA
1 TCATTCAAGGCAGTAGGTCC-AGGAAAAACACCATCATGCGAGTTAGTAGGTCCAAGAGAA
304430 TCCTGTTCAA
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
66 49 0.94
67 3 0.06
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (66 bp):
TCATTCAAGGCAGTAGGTCCAGGAAAAACACCATCATGCGAGTTAGTAGGTCCAAGAGAAACACC
T
Found at i:305904 original size:153 final size:153
Alignment explanation
Indices: 305624--305935 Score: 552
Period size: 153 Copynumber: 2.0 Consensus size: 153
305614 GTAAAACAAG
* *
305624 ATCAGATGAAAACCGAATTGTTCCTGCAAAGCTAACTGGAATGATGGATCCATTAGGTAAGGTGA
1 ATCAGATGAAAACCGAACTGTGCCTGCAAAGCTAACTGGAATGATGGATCCATTAGGTAAGGTGA
305689 CTGAACAACTTGTTATGGGAAATAATGATTCAAAGAGAGTCCTTGAATAACATATATCTCTTGAA
66 CTGAACAACTTGTTATGGGAAATAATGATTCAAAGAGAGTCCTTGAATAACATATATCTCTTGAA
*
305754 GCCCCATAATCTAAAATCCAGTA
131 ACCCCATAATCTAAAATCCAGTA
*
305777 ATCAGATGAAAACCGAACTGTGCCTGCAAAGTTAACTGGAATGATGGATCCATTAGGTAAGGTGA
1 ATCAGATGAAAACCGAACTGTGCCTGCAAAGCTAACTGGAATGATGGATCCATTAGGTAAGGTGA
* * * *
305842 CTGAACAACTTGTTATGGGAAATAGTTATTCAAATAGAGTCCTTGAATAACATATATGTCTTGAA
66 CTGAACAACTTGTTATGGGAAATAATGATTCAAAGAGAGTCCTTGAATAACATATATCTCTTGAA
305907 ACCCCATAATCTAAAATCCAGTA
131 ACCCCATAATCTAAAATCCAGTA
305930 ATCAGA
1 ATCAGA
305936 CATTCCAACA
Statistics
Matches: 151, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
153 151 1.00
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.27
Consensus pattern (153 bp):
ATCAGATGAAAACCGAACTGTGCCTGCAAAGCTAACTGGAATGATGGATCCATTAGGTAAGGTGA
CTGAACAACTTGTTATGGGAAATAATGATTCAAAGAGAGTCCTTGAATAACATATATCTCTTGAA
ACCCCATAATCTAAAATCCAGTA
Found at i:314418 original size:13 final size:13
Alignment explanation
Indices: 314398--314433 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
314388 ATAAAATTTT
314398 ATTAAATTAA-TA
1 ATTAAATTAATTA
314410 ATGTAAATTAATTA
1 AT-TAAATTAATTA
314424 ATTAAATTAA
1 ATTAAATTAA
314434 AAATTATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 2 0.09
13 16 0.73
14 4 0.18
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (13 bp):
ATTAAATTAATTA
Found at i:318327 original size:30 final size:30
Alignment explanation
Indices: 318288--318344 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
318278 ATTTTATATT
* *
318288 AAGGGGTGAACTTGAATTTATAGAATTTTA
1 AAGGAGTGAACTTGAATTTATAAAATTTTA
318318 AAGGAGTGAACTTGAATTTATAAAATT
1 AAGGAGTGAACTTGAATTTATAAAATT
318345 CTAGGGATGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.40, C:0.04, G:0.21, T:0.35
Consensus pattern (30 bp):
AAGGAGTGAACTTGAATTTATAAAATTTTA
Found at i:319933 original size:37 final size:37
Alignment explanation
Indices: 319846--319935 Score: 117
Period size: 37 Copynumber: 2.4 Consensus size: 37
319836 GTCCTATTAA
* *
319846 GATTCAAACTCCTAAAAATAAGATAGAATTTTGCTAG
1 GATTCAAACTCCTAAAAATAAGATAGAATTCTACTAG
* * * *
319883 GATTCAAATTCCTAAAAATATGATAGAGTTCTACTAT
1 GATTCAAACTCCTAAAAATAAGATAGAATTCTACTAG
*
319920 GATTTAAACTCCTAAA
1 GATTCAAACTCCTAAA
319936 GATAGGATCC
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.42, C:0.14, G:0.11, T:0.32
Consensus pattern (37 bp):
GATTCAAACTCCTAAAAATAAGATAGAATTCTACTAG
Found at i:320470 original size:22 final size:21
Alignment explanation
Indices: 320414--320506 Score: 84
Period size: 22 Copynumber: 4.3 Consensus size: 21
320404 TTTTTTACAC
*
320414 TATATA-TTATTATTATATATA
1 TATATATTTATTATT-TATTTA
* *
320435 CATATATTTTTTATTTATTTA
1 TATATATTTATTATTTATTTA
320456 TAT-TCATTTGATTATTT-TTTAA
1 TATAT-ATTT-ATTATTTATTT-A
*
320478 TACTATATTTATTATTTATATA
1 TA-TATATTTATTATTTATTTA
320500 TATATAT
1 TATATAT
320507 ATATATACTC
Statistics
Matches: 59, Mismatches: 6, Indels: 14
0.75 0.08 0.18
Matches are distributed among these distances:
20 1 0.02
21 24 0.41
22 26 0.44
23 7 0.12
24 1 0.02
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.61
Consensus pattern (21 bp):
TATATATTTATTATTTATTTA
Found at i:320503 original size:19 final size:19
Alignment explanation
Indices: 320414--320504 Score: 69
Period size: 19 Copynumber: 4.6 Consensus size: 19
320404 TTTTTTACAC
*
320414 TATATAT-TA-TTATTATA
1 TATATATATATTTATTATT
* *
320431 TATACATATATTTTTTATT
1 TATATATATATTTATTATT
*
320450 TATTTATATTCATTTGATTATTT
1 TATATATA-T-ATTT-ATTA-TT
*
320473 TTTAATACTATATTTATTATT
1 TAT-ATA-TATATTTATTATT
320494 TATATATATAT
1 TATATATATAT
320505 ATATATATAC
Statistics
Matches: 57, Mismatches: 9, Indels: 14
0.71 0.11 0.17
Matches are distributed among these distances:
17 6 0.11
18 2 0.04
19 17 0.30
20 4 0.07
21 8 0.14
22 7 0.12
23 8 0.14
24 3 0.05
25 2 0.04
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (19 bp):
TATATATATATTTATTATT
Found at i:320726 original size:32 final size:29
Alignment explanation
Indices: 320647--320726 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 29
320637 TATAAGCCAA
320647 TTATCATTATATGTATATTTTATATTTGGTTT
1 TTAT-ATTATAT-TATA-TTTATATTTGGTTT
* *
320679 ATATATT-TATT-TATTTATTTTTGGTTT
1 TTATATTATATTATATTTATATTTGGTTT
320706 TT-T-TTATATTATA-TTATATTT
1 TTATATTATATTATATTTATATTT
320727 TCATATTACT
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
25 2 0.05
26 12 0.29
27 16 0.38
28 2 0.05
29 1 0.02
30 3 0.07
31 3 0.07
32 3 0.07
ACGTcount: A:0.25, C:0.01, G:0.06, T:0.68
Consensus pattern (29 bp):
TTATATTATATTATATTTATATTTGGTTT
Found at i:320727 original size:18 final size:19
Alignment explanation
Indices: 320706--320756 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 19
320696 TTTTTGGTTT
320706 TTTTTATATTATATTA-TA
1 TTTTTATATTATATTATTA
*
320724 TTTTCATATTACTATTATTA
1 TTTTTATATTA-TATTATTA
*
320744 TTGTTATGATTAT
1 TTTTTAT-ATTAT
320757 TATTTTTCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 10 0.37
19 5 0.19
20 8 0.30
21 4 0.15
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.63
Consensus pattern (19 bp):
TTTTTATATTATATTATTA
Found at i:320811 original size:4 final size:4
Alignment explanation
Indices: 320798--320827 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
320788 TATATATTAA
320798 TATT TCATT TATT TATT TATT TATT TATT T
1 TATT T-ATT TATT TATT TATT TATT TATT T
320828 TCCTTTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.73
Consensus pattern (4 bp):
TATT
Found at i:320885 original size:9 final size:8
Alignment explanation
Indices: 320858--320883 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
320848 ATTTTTATTC
320858 TTCATTTT
1 TTCATTTT
320866 TTCATTTT
1 TTCATTTT
320874 TTCATTTT
1 TTCATTTT
320882 TT
1 TT
320884 TCCTCTAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.77
Consensus pattern (8 bp):
TTCATTTT
Found at i:325276 original size:9 final size:9
Alignment explanation
Indices: 325254--325309 Score: 52
Period size: 9 Copynumber: 6.9 Consensus size: 9
325244 CAATCAAAAA
325254 CAAAA-AAG
1 CAAAAGAAG
325262 -AAAAGAAG
1 CAAAAGAAG
325270 CAAAAGAAG
1 CAAAAGAAG
325279 -AAAA-AA-
1 CAAAAGAAG
*
325285 -AAAAGAAA
1 CAAAAGAAG
*
325293 CAAAAGAAA
1 CAAAAGAAG
325302 CAAAAGAA
1 CAAAAGAA
325310 AAAAGAAAGA
Statistics
Matches: 43, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
6 4 0.09
7 8 0.19
8 7 0.16
9 24 0.56
ACGTcount: A:0.79, C:0.07, G:0.14, T:0.00
Consensus pattern (9 bp):
CAAAAGAAG
Done.