genome.fa.s4838.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004838.1 Hibiscus syriacus cultivar Beakdansim tig00010906_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54575

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1960--2007	23	2.0	24	96	4	89	43	25	4	27	1.72
2178--2222	22	2.0	24	86	8	67	31	0	0	68	0.89
2186--2231	22	2.1	22	84	8	58	32	0	0	67	0.91
8382--8457	38	1.9	38	86	7	107	38	5	2	53	1.37
10281--10405	42	3.0	43	77	12	132	46	5	21	26	1.73
11496--11578	28	3.0	28	80	7	96	40	12	9	37	1.75
16451--16483	12	2.5	13	90	9	50	60	0	0	39	0.97
17507--17583	31	2.4	32	86	2	111	37	11	12	37	1.81
29294--29325	15	2.1	16	94	5	57	46	0	0	53	1.00
29587--29857	138	2.0	138	99	0	533	35	16	6	40	1.75
30606--30735	66	2.0	66	87	0	188	37	23	20	19	1.94
31741--31796	27	2.0	28	89	3	87	23	16	19	41	1.90
38013--38089	31	2.5	31	80	2	91	27	31	27	14	1.95
37966--38089	63	2.0	63	82	6	153	25	29	28	16	1.97
38959--38996	7	5.4	7	100	0	76	26	28	28	15	1.96
38986--39050	22	3.0	22	97	0	121	10	23	47	18	1.79
38993--39033	5	7.8	5	84	10	55	4	21	53	19	1.63
39047--39136	19	4.8	18	80	15	110	27	31	27	13	1.94
39091--39164	29	2.5	29	89	6	105	29	25	27	17	1.97
39047--39164	9	12.3	9	78	10	101	28	27	27	15	1.96
45408--45484	31	2.5	31	80	2	91	27	31	27	14	1.95
46353--46383	7	4.4	7	100	0	62	25	29	29	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46373--46437	22	3.0	22	97	0	121	10	23	47	18	1.79
46380--46420	5	7.8	5	84	10	55	4	21	53	19	1.63
46434--46523	19	4.8	18	80	15	110	27	31	27	13	1.94
46478--46551	29	2.5	29	89	6	105	29	25	27	17	1.97
46434--46551	9	12.3	9	78	10	101	28	27	27	15	1.96
51231--51262	16	2.0	16	100	0	64	25	12	25	37	1.91

Tables:   1

The End!