Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004839.1 Hibiscus syriacus cultivar Beakdansim tig00010907_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64207

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4438--4510
36
2.0
36
97
0
137
12
28
23
35
1.91
16790--16842
21
2.6
21
82
11
65
35
9
1
52
1.45
21520--21555
16
2.2
16
90
5
54
38
2
5
52
1.39
23407--23436
2
15.0
2
100
0
60
50
0
0
50
1.00
32483--33040
216
2.6
215
91
2
860
51
8
11
29
1.67
33360--33398
19
2.1
19
95
0
69
20
38
15
25
1.92
33346--33508
65
2.5
65
84
1
220
30
26
15
27
1.96
39302--39357
22
2.7
21
83
10
62
30
23
17
28
1.97
40886--40929
21
2.1
21
86
0
61
9
36
15
38
1.80
41967--42005
19
2.1
19
95
0
69
20
38
15
25
1.92
41904--42067
65
2.5
64
82
9
174
29
26
17
25
1.98
43029--43127
2
47.5
2
69
15
58
46
3
5
45
1.40
43032--43105
22
3.5
22
83
12
109
45
2
5
45
1.40
43035--43125
42
2.2
42
88
7
132
46
3
5
45
1.43
43195--43232
11
3.5
11
88
0
58
50
2
2
44
1.30
43238--43291
17
3.1
17
81
2
63
46
0
3
50
1.19
43024--43297
142
2.0
140
82
5
340
45
5
5
43
1.49
43408--43488
35
2.3
35
83
10
103
38
8
0
53
1.32
43475--43573
33
3.1
32
77
13
107
42
6
6
45
1.53
43518--43680
18
8.7
18
73
17
118
42
9
8
39
1.67
43558--43705
80
1.9
75
87
6
215
41
9
8
41
1.67
43660--43726
33
2.0
33
94
0
116
43
10
5
40
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43688--43799
51
2.2
52
85
3
154
38
9
7
44
1.65
43688--43821
51
2.6
51
82
4
126
40
8
5
44
1.60
43923--43955
9
3.7
9
84
15
50
54
6
0
39
1.25
43916--44116
18
11.2
18
73
14
164
46
5
5
42
1.51
43939--44101
33
4.8
33
82
8
193
45
6
5
42
1.52
43916--44066
71
2.2
71
90
2
234
47
5
3
43
1.46
43895--44099
104
2.0
104
82
7
256
47
6
4
41
1.49
44241--44301
14
4.3
14
74
12
52
44
6
3
45
1.46
44195--44315
65
1.9
64
86
5
172
42
5
2
48
1.40
44217--44329
43
2.8
40
82
14
137
43
6
2
47
1.42
44248--44309
14
4.4
14
74
11
54
46
8
1
43
1.42
44419--44461
12
3.2
12
77
22
50
48
0
0
51
1.00
46586--46616
15
2.1
15
100
0
62
48
19
6
25
1.72
46937--46974
13
2.8
13
82
17
51
60
0
2
36
1.11
46953--47070
19
6.5
19
69
17
72
59
2
5
33
1.33
46954--47069
37
3.2
36
69
20
107
58
2
5
33
1.34
49845--49936
3
30.7
3
93
0
148
61
0
33
4
1.15
54426--54478
20
2.7
19
77
13
54
33
0
0
66
0.92
54421--54496
27
2.8
26
71
21
66
36
0
0
63
0.95
54459--54492
13
2.5
14
95
4
61
41
0
0
58
0.98
54574--54603
15
2.0
15
93
0
51
26
3
30
40
1.72
56917--56966
22
2.3
22
79
6
57
34
6
12
48
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61628--61662
2
17.5
2
100
0
70
51
0
0
48
1.00
61662--61700
2
19.5
2
100
0
78
51
0
48
0
1.00

Tables:   1

The End!