Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000484.1 Hibiscus syriacus cultivar Beakdansim tig00000922_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146073

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1807--1841
8
4.4
8
96
0
61
8
17
11
62
1.52
3918--3962
21
2.1
21
87
0
63
31
28
24
15
1.96
4630--4673
22
2.0
22
86
4
63
45
0
22
31
1.53
5435--5882
146
3.0
149
97
1
834
27
17
20
34
1.95
5861--5905
23
2.0
23
86
0
63
20
24
28
26
1.99
13185--13224
21
2.0
20
85
5
53
72
5
10
12
1.26
14122--14190
2
37.5
2
80
16
78
44
0
0
55
0.99
17895--17926
16
1.9
17
93
6
57
37
21
12
28
1.90
18005--18047
15
2.8
15
80
16
52
44
27
6
20
1.77
20983--21027
18
2.5
18
92
0
72
62
15
11
11
1.55
21698--21722
2
12.5
2
100
0
50
48
0
0
52
1.00
25938--25981
21
2.1
21
87
4
63
9
22
9
59
1.56
26335--26375
10
4.0
11
81
12
52
26
0
0
73
0.84
26651--26688
20
2.0
20
89
5
60
60
0
0
39
0.97
26748--26829
42
1.9
43
85
7
114
46
2
3
47
1.33
26813--26873
17
3.3
17
77
20
68
55
1
1
40
1.19
26831--26872
22
1.9
22
85
9
59
57
2
2
38
1.25
27029--27090
24
2.6
22
77
10
61
53
0
1
45
1.10
27112--27158
19
2.5
19
75
6
51
61
2
0
36
1.08
28431--28520
9
10.7
9
67
25
63
47
15
12
24
1.79
28420--28523
25
4.2
25
100
0
208
48
16
12
23
1.80
45430--45475
20
2.2
20
92
3
74
45
13
19
21
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48378--48427
20
2.4
21
80
3
57
40
20
20
20
1.92
48419--48511
20
4.7
20
90
0
141
26
26
20
25
1.99
48847--48924
20
3.9
20
94
0
138
38
24
21
15
1.92
48944--49007
19
3.4
19
100
0
128
15
20
17
46
1.83
48924--49012
38
2.5
35
84
12
119
13
22
17
46
1.83
49012--49049
20
1.9
20
94
0
67
13
13
28
44
1.81
49147--49184
14
2.7
15
84
12
53
47
18
0
34
1.49
50790--50857
20
3.5
19
82
6
73
38
22
22
17
1.93
50830--50919
32
2.8
32
93
3
144
47
24
16
11
1.79
50830--50919
14
5.4
17
73
22
75
47
24
16
11
1.79
50915--50973
19
3.1
19
80
2
55
16
20
20
42
1.89
50930--50973
20
2.2
20
84
4
54
18
22
20
38
1.93
51465--51504
18
2.2
18
90
0
62
15
12
45
27
1.82
52829--52902
20
3.8
20
81
1
69
43
22
17
16
1.88
53329--53463
20
6.7
20
80
7
121
24
17
24
33
1.96
53329--53466
61
2.3
61
85
0
195
23
17
23
34
1.96
53329--53484
61
2.6
61
82
2
161
23
19
23
33
1.97
53534--53574
21
2.0
21
85
0
55
34
29
17
19
1.94
61538--61570
15
2.2
15
100
0
66
42
6
6
45
1.53
69552--69611
30
2.0
30
86
0
84
15
25
33
26
1.95
75712--75779
27
2.5
27
97
0
127
13
10
4
72
1.26
75945--76014
36
1.9
36
97
0
131
18
17
27
37
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79691--79732
18
2.4
17
88
4
66
52
19
9
19
1.72
81957--81991
18
1.9
18
88
11
54
34
2
2
60
1.26
88586--88672
31
2.8
31
81
6
106
33
16
16
34
1.91
91682--91746
30
2.2
30
94
0
112
41
10
13
33
1.80
91682--91755
30
2.5
30
88
4
96
37
10
14
36
1.82
93369--93508
35
4.0
35
96
1
246
30
5
18
45
1.72
110727--110783
15
3.7
15
84
9
71
71
1
5
21
1.14
115699--115766
30
2.3
30
89
5
102
19
38
16
26
1.92
120318--120399
41
2.0
41
85
0
110
35
21
17
25
1.95
123400--123426
4
6.8
4
100
0
54
22
0
0
77
0.76
128565--128607
23
1.9
22
90
4
68
23
0
4
72
1.04
144974--145032
29
2.0
29
96
0
109
47
13
13
25
1.79

Tables:   1

The End!