Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004840.1 Hibiscus syriacus cultivar Beakdansim tig00010911_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102151

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2250--2331
23
3.6
21
77
11
74
78
4
15
1
0.99
2286--2348
9
6.8
9
82
12
56
80
3
14
1
0.90
2282--2348
22
2.9
21
77
22
64
80
2
14
1
0.90
5955--5993
20
2.0
19
90
5
60
25
30
12
30
1.93
5959--6002
20
2.2
20
83
0
52
29
34
13
22
1.93
8284--8356
36
2.0
36
81
5
85
35
20
9
34
1.85
8468--8663
66
3.0
66
86
4
261
26
17
14
41
1.88
8708--8971
137
1.9
137
82
5
327
27
31
15
26
1.96
12491--12519
2
14.5
2
100
0
58
48
0
51
0
1.00
13303--13360
30
1.9
30
89
6
91
55
17
12
15
1.70
24972--25003
15
2.1
15
94
0
55
65
0
0
34
0.93
25224--25294
31
2.3
31
92
0
115
49
15
11
23
1.77
25821--25906
23
3.7
23
79
11
88
40
2
1
55
1.20
25855--25935
23
4.2
18
69
30
53
40
2
1
55
1.21
25999--26046
26
2.0
24
84
12
62
56
2
2
39
1.23
26044--26082
20
1.9
20
85
15
53
48
2
2
46
1.29
28338--28374
2
18.0
2
88
5
56
48
5
0
45
1.25
30236--30278
2
21.5
2
100
0
86
51
0
0
48
1.00
34775--35684
131
6.9
131
96
0
1640
22
12
25
39
1.89
36292--36343
26
2.0
26
100
0
104
38
7
15
38
1.76
38176--38236
23
2.7
23
94
0
104
22
31
19
26
1.98
38220--38266
12
4.0
12
80
5
60
19
44
21
14
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42166--42237
25
2.8
26
80
12
78
66
9
2
20
1.33
44415--44466
9
6.1
9
76
13
56
63
1
0
34
1.06
44412--44464
16
3.2
17
84
10
65
66
1
0
32
1.03
44418--44467
17
3.0
17
91
2
75
60
4
0
36
1.16
44521--44549
10
2.9
10
100
0
58
41
0
37
20
1.53
49349--49425
16
4.7
16
79
8
84
0
61
0
38
0.96
49346--49417
22
3.4
22
90
5
112
0
61
0
38
0.96
49346--49417
6
12.3
6
75
16
71
0
61
0
38
0.96
49355--49419
10
6.3
10
82
7
85
0
60
0
40
0.97
49464--49560
26
3.6
27
84
10
119
47
0
4
48
1.21
49544--49593
2
26.0
2
84
15
70
46
0
2
52
1.12
49517--49579
10
6.7
9
75
7
54
46
0
3
50
1.17
49897--50093
85
2.3
85
83
10
262
30
1
12
54
1.47
50726--50756
13
2.5
12
90
10
53
6
0
3
90
0.55
59221--59280
2
30.0
2
100
0
120
50
0
0
50
1.00
59482--59531
17
2.9
17
80
14
59
72
0
4
24
1.02
59471--59523
26
2.1
25
82
10
63
73
0
3
22
0.99
59781--59823
18
2.5
17
85
7
61
67
2
4
25
1.22
59705--59824
60
2.0
57
83
12
145
61
1
3
33
1.22
60180--60284
37
2.8
37
85
0
138
29
14
14
41
1.85
60826--61352
105
5.0
105
87
3
706
22
17
25
33
1.96
61451--61532
34
2.3
35
85
4
103
40
15
19
24
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61450--61749
104
2.9
104
93
2
502
37
13
20
29
1.90
61652--61726
39
1.9
39
83
5
98
36
13
24
26
1.92
61865--61978
36
3.2
36
73
2
113
43
14
16
25
1.85
61820--61994
72
2.4
74
84
8
216
41
13
18
26
1.87
63135--63854
183
3.9
183
96
0
1298
30
21
20
27
1.98
68571--68613
18
2.5
17
85
7
61
67
2
4
25
1.22
68505--68621
64
1.9
61
80
13
134
62
3
3
30
1.28
68970--69073
37
2.8
37
85
0
136
30
14
11
43
1.81
77603--77634
11
2.8
12
90
9
50
28
21
18
31
1.97
82571--82645
10
7.7
10
69
21
52
9
10
21
58
1.59
82577--82641
16
4.1
16
93
0
112
7
10
23
58
1.57
82573--82623
26
2.0
26
84
7
68
9
9
19
60
1.55
85496--85540
20
2.2
20
84
7
56
20
8
2
68
1.27
86682--86741
26
2.3
26
94
0
102
21
25
1
51
1.57
87730--88162
134
3.2
137
81
8
490
32
13
11
42
1.80
89596--89635
20
1.9
22
90
10
66
65
2
0
32
1.06
95603--95642
15
2.5
17
80
16
57
47
0
5
47
1.24
100869--100898
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1

The End!