genome.fa.s4843.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004843.1 Hibiscus syriacus cultivar Beakdansim tig00010923_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75292

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7213--7250	17	2.2	17	86	9	51	57	5	15	21	1.57
7350--7385	16	2.2	17	90	5	56	55	16	2	25	1.55
7349--7387	17	2.3	18	82	13	55	56	17	2	23	1.53
10696--10727	11	2.9	11	95	0	55	50	0	3	46	1.17
10834--10891	22	2.6	22	76	13	57	22	6	1	68	1.22
10940--10996	21	2.8	20	70	15	53	66	5	7	21	1.36
11100--11776	335	2.0	336	93	1	1144	46	7	5	40	1.55
12580--12742	40	4.1	40	94	0	290	32	14	3	49	1.61
13937--13982	2	23.0	2	100	0	92	50	0	0	50	1.00
21367--21639	133	2.1	133	100	0	546	46	12	20	20	1.83
23076--23348	43	6.3	43	77	7	243	26	18	4	50	1.64
23120--23348	85	2.7	85	77	8	225	26	20	3	49	1.66
31230--31263	3	11.0	3	93	6	59	64	0	35	0	0.94
31525--31555	16	1.9	16	93	0	53	51	22	6	19	1.69
33819--33988	72	2.4	72	85	4	227	24	15	27	32	1.95
43090--43147	18	3.0	19	80	14	82	50	8	10	31	1.67
43474--43511	20	1.9	20	88	0	58	39	7	7	44	1.63
44285--44332	19	2.5	20	75	3	53	29	12	8	50	1.69
45476--45515	21	1.9	22	90	10	66	12	10	40	37	1.77
46769--46805	12	3.2	11	92	7	56	70	0	29	0	0.88
48661--48699	20	2.0	20	94	0	69	46	25	20	7	1.77
48742--48852	20	5.8	20	77	12	117	24	17	23	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48704--48844	34	4.0	34	77	10	138	21	17	23	37	1.94
48700--48850	74	2.1	73	84	3	196	23	17	21	37	1.94
49023--49057	18	1.9	18	94	0	61	17	2	25	54	1.57
51334--51385	24	2.2	24	82	0	59	36	17	19	26	1.94
52304--52340	19	1.9	19	88	0	56	21	13	29	35	1.92
53505--53558	20	2.7	20	97	0	99	29	9	18	42	1.81
60367--61178	425	1.9	420	89	4	1245	50	8	12	29	1.69
60367--61178	209	3.8	211	90	3	1213	50	8	12	29	1.69
61203--61303	2	50.0	2	70	16	66	47	2	4	44	1.40
61219--61546	20	16.0	21	64	22	85	46	4	5	43	1.47
61264--61379	25	4.5	26	79	13	107	49	4	6	40	1.47
61218--61389	51	3.5	48	77	10	147	47	4	6	41	1.48
61422--61546	2	65.5	2	66	20	54	45	2	3	48	1.31
61416--61545	52	2.5	55	76	16	136	45	2	3	48	1.33
61421--61546	11	11.5	11	66	23	61	45	2	3	49	1.31
61562--61587	6	4.3	6	100	0	52	34	0	0	65	0.93
61595--61667	20	3.4	20	79	17	83	39	6	1	52	1.37
61606--61655	13	3.8	13	77	17	59	38	6	2	54	1.37
61608--61667	23	2.7	23	80	16	72	38	6	1	53	1.37
61619--61706	33	2.8	32	84	5	115	42	6	4	46	1.51
61666--61827	56	2.7	61	78	14	192	43	8	8	40	1.63
61729--61819	18	4.9	18	79	10	94	41	9	6	41	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61729--61852	38	3.4	38	80	13	138	41	10	6	41	1.65
61706--61844	56	2.6	53	80	13	149	41	8	7	41	1.65
61790--61923	33	4.5	31	74	19	133	41	10	6	41	1.66
61817--61967	53	2.8	53	91	3	232	41	8	5	44	1.58
61902--61974	20	3.6	20	80	9	78	43	5	4	46	1.45
61805--61996	33	5.6	33	72	16	115	42	8	5	43	1.59
61928--61996	34	2.0	36	88	5	106	46	7	4	42	1.51
62011--62219	33	6.4	33	73	19	188	43	7	6	42	1.58
62092--62149	17	3.5	17	69	21	59	41	5	6	46	1.53
62035--62164	18	7.4	18	70	13	101	43	7	6	41	1.60
62049--62219	91	1.8	94	90	5	276	43	7	7	42	1.59
62041--62240	91	2.1	94	81	9	257	45	7	6	42	1.56
62282--62403	62	2.0	62	85	0	163	50	6	7	35	1.56
66155--66248	17	5.7	17	71	25	69	46	4	1	47	1.28
66133--66229	51	1.9	51	97	0	185	50	3	2	44	1.29

Tables:   1

The End!