genome.fa.s4844.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004844.1 Hibiscus syriacus cultivar Beakdansim tig00010925_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29805

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7209--7279	32	2.2	32	87	5	108	26	45	15	12	1.82
7534--7590	29	2.0	29	85	0	78	17	33	26	22	1.96
7901--7950	20	2.5	21	87	9	70	64	2	30	4	1.23
8277--8346	30	2.4	29	81	13	81	41	0	11	47	1.40
10605--10652	14	3.6	14	81	16	66	47	16	0	35	1.47
10605--10701	14	6.7	14	70	17	65	49	12	0	38	1.41
10622--10832	96	2.2	94	90	5	334	46	10	0	42	1.38
10622--10840	48	4.3	50	88	8	254	47	10	0	42	1.38
10914--10961	14	3.6	14	81	16	66	47	16	0	35	1.47
10913--11011	25	4.0	25	72	22	91	46	14	0	39	1.44
10982--11228	59	4.3	60	86	8	370	45	11	0	42	1.43
10929--11220	111	2.7	109	85	7	410	46	10	0	42	1.42
11304--11347	14	3.4	14	78	18	58	45	18	0	36	1.49
11299--11347	25	2.0	25	91	0	80	46	16	2	34	1.58
11314--11408	50	2.0	48	82	13	119	51	10	0	37	1.37
11359--11549	56	3.4	57	88	9	277	46	12	0	41	1.41
14401--14756	119	3.0	120	92	4	600	24	14	25	35	1.94
14622--14657	18	2.0	18	94	0	63	11	19	33	36	1.87
14766--14823	23	2.5	23	88	0	80	22	27	24	25	2.00
14929--14962	17	1.9	18	88	5	52	35	0	26	38	1.57
14925--14969	18	2.5	18	82	7	56	33	0	24	42	1.55
17915--17977	17	3.6	17	74	14	65	53	9	0	36	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18743--18792	23	2.2	23	82	3	57	38	10	20	32	1.85
18917--18960	23	1.9	23	95	0	79	29	27	20	22	1.99
19065--19142	32	2.4	32	93	4	131	10	14	48	26	1.75
20271--20509	41	5.8	41	70	14	143	30	16	22	30	1.96
20280--20543	82	3.2	82	80	8	252	29	16	22	31	1.96
22011--22046	18	2.0	18	100	0	72	38	27	22	11	1.88
21970--22088	59	2.0	60	90	1	186	35	18	23	22	1.96
22034--22379	124	2.8	125	86	3	486	35	17	21	26	1.95
22030--22379	82	4.2	84	83	4	442	35	17	21	26	1.95
22030--22379	42	8.5	42	86	4	442	35	17	21	26	1.95
22736--22784	23	2.1	23	88	0	71	4	36	22	36	1.73
29735--29797	21	3.0	21	81	4	83	38	14	41	6	1.71

Tables:   1

The End!