genome.fa.s4845.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004845.1 Hibiscus syriacus cultivar Beakdansim tig00010926_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  163978

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
470--509	21	1.9	21	84	0	53	65	12	10	12	1.49
1127--1334	115	1.8	114	89	1	326	37	16	21	25	1.94
1214--1494	130	2.2	130	86	1	393	33	19	21	25	1.97
8721--8937	45	4.8	45	86	0	290	31	22	21	24	1.98
39152--39354	7	29.0	7	100	0	406	14	28	14	42	1.84
39445--39540	7	13.7	7	100	0	192	13	29	14	42	1.84
58511--58538	14	2.0	14	100	0	56	50	7	0	42	1.30
58545--58591	24	1.9	25	86	4	69	29	21	10	38	1.87
63512--63575	22	3.0	22	69	17	53	50	3	0	46	1.17
69151--69193	14	3.0	14	83	6	50	58	0	0	41	0.98
69151--69238	30	2.8	31	77	10	90	60	1	0	38	1.04
69156--69236	15	5.5	14	72	20	58	60	1	0	38	1.05
69164--69240	33	2.4	32	85	8	104	61	1	0	37	1.05
69164--69254	30	2.8	32	73	17	80	60	2	0	37	1.09
80841--80869	13	2.2	13	100	0	58	13	20	41	24	1.89
85758--85784	3	9.0	3	100	0	54	0	0	33	66	0.92
85983--86167	91	2.0	91	100	0	370	20	18	23	37	1.94
87354--87428	31	2.4	31	86	4	98	26	6	13	53	1.64
92544--92581	20	1.9	20	89	10	60	13	31	34	21	1.91
92713--92759	23	2.0	23	95	0	85	42	8	25	23	1.82
92718--92767	23	2.4	21	83	12	59	46	10	20	24	1.81
93379--93426	2	23.5	2	95	4	87	50	0	2	47	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94107--94147	18	2.3	18	84	12	50	46	2	14	36	1.58
94592--94634	22	2.0	22	90	4	70	18	23	32	25	1.97
94959--95006	15	3.3	15	72	27	50	68	2	25	4	1.18
98922--98967	23	2.0	22	87	4	65	56	6	13	23	1.60
100115--100174	28	2.1	29	84	3	77	30	5	11	53	1.58
100884--100938	26	2.1	26	80	12	60	47	0	0	52	1.00
103220--103370	74	2.0	74	89	0	230	34	7	14	43	1.73
105931--105955	12	2.1	12	100	0	50	24	8	16	52	1.70
109495--109578	29	3.0	29	65	18	70	30	9	7	52	1.61
130818--130885	14	5.0	13	70	22	59	79	2	16	1	0.93
130825--130935	27	3.9	28	72	19	79	76	2	17	3	1.04
130821--130914	5	17.4	5	72	20	66	77	2	17	3	0.99
130861--130903	21	2.0	22	86	8	63	72	2	18	6	1.19
130821--130915	6	16.3	6	68	18	58	77	2	16	3	0.99
130825--130940	44	2.7	43	72	19	107	75	2	18	4	1.09
134492--134573	40	2.0	40	100	0	164	23	17	26	32	1.96
134677--134803	48	2.8	45	84	7	157	38	7	23	30	1.82
135543--135582	21	1.9	21	90	10	64	52	5	2	40	1.37
137660--137721	6	10.3	6	98	0	115	33	0	33	32	1.58
139700--139751	21	2.5	20	75	3	50	40	19	23	17	1.91
139740--139793	20	2.7	20	94	0	90	31	20	18	29	1.96
139737--139874	61	2.3	61	80	0	159	34	22	17	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139802--139854	20	2.7	20	84	0	70	26	28	20	24	1.99
140328--140391	20	3.2	20	86	0	83	15	18	21	43	1.87
140528--140582	25	2.2	24	78	15	58	20	7	18	54	1.66
141704--141748	18	2.5	18	88	0	72	26	44	15	13	1.83
142241--142285	20	2.3	20	88	3	74	37	17	24	20	1.93
142249--142364	19	6.6	19	71	21	92	43	21	21	13	1.87
142285--142342	14	3.9	14	79	16	71	48	24	17	10	1.78
142269--142359	32	2.8	33	94	3	166	47	21	18	12	1.81
142376--142433	14	3.9	14	79	16	71	10	17	24	48	1.78
142392--142491	19	5.5	19	77	11	77	14	20	22	44	1.86
142371--142449	32	2.4	33	95	2	142	11	18	22	46	1.81
142422--142488	19	3.5	19	85	2	89	14	22	23	38	1.92
142436--142513	20	4.0	20	81	1	68	19	17	24	38	1.93
144334--144375	14	3.0	14	85	0	57	30	0	21	47	1.51
144493--144538	19	2.4	19	100	0	92	47	17	19	15	1.82
144583--144632	20	2.5	20	93	3	84	18	24	26	32	1.97
145839--145892	24	2.2	24	90	0	81	22	16	20	40	1.91
148357--148481	33	3.8	33	88	4	198	43	19	22	15	1.88
148358--148490	66	2.0	66	95	0	239	41	18	22	17	1.90
148357--148487	19	7.7	19	66	23	103	42	19	22	15	1.88
148482--148564	33	2.5	33	96	0	148	14	22	18	44	1.86
148679--148715	14	2.6	14	91	0	65	45	24	0	29	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150070--150276	42	4.9	41	72	9	166	23	17	36	22	1.95
150070--150220	21	7.2	21	64	10	67	21	18	37	22	1.95
150100--150276	84	2.1	84	98	0	345	23	16	37	21	1.93
150497--150675	91	1.9	93	88	6	276	49	16	12	21	1.78
152378--152476	33	3.0	33	90	1	153	39	23	25	12	1.89
152353--152498	19	8.1	19	71	17	105	43	20	23	13	1.86
152494--152540	19	2.5	19	92	0	76	8	14	25	51	1.71
153056--153108	20	2.7	20	93	0	88	26	20	28	24	1.99
153117--153170	20	2.7	20	94	0	90	25	18	22	33	1.97
153057--153191	61	2.2	61	78	2	146	22	20	23	33	1.97
153241--153281	21	2.0	21	85	0	55	36	31	14	17	1.90
154520--154578	29	2.0	29	90	0	91	40	5	16	37	1.71
156616--156660	23	2.0	23	90	0	72	24	26	26	22	2.00
157034--157061	14	2.0	14	100	0	56	35	28	7	28	1.84
157309--157343	2	17.0	2	88	5	52	45	2	0	51	1.16
158201--158245	21	2.1	21	87	0	63	15	24	28	31	1.96
161368--161412	23	2.0	23	90	0	72	24	26	26	22	2.00
161380--161694	149	2.1	149	95	1	569	34	21	17	27	1.95
161795--161822	14	2.0	14	100	0	56	35	28	7	28	1.84
162954--162998	21	2.1	21	87	0	63	15	24	28	31	1.96

Tables:   1

The End!