Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004847.1 Hibiscus syriacus cultivar Beakdansim tig00010928_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91221

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4253--4310
22
2.7
22
89
7
84
56
12
5
25
1.56
8307--8340
17
2.0
17
100
0
68
58
5
5
29
1.45
9693--9726
7
4.9
7
100
0
68
14
0
41
44
1.45
13865--13906
22
1.9
22
85
9
59
38
4
0
57
1.20
14602--14771
60
2.8
60
78
4
184
39
5
22
32
1.77
17367--17452
43
2.0
44
88
6
131
40
3
0
55
1.17
25005--25032
2
14.0
2
100
0
56
50
0
0
50
1.00
25182--25209
2
14.0
2
100
0
56
50
0
0
50
1.00
28707--28750
17
2.6
17
77
0
52
59
0
0
40
0.98
33233--33276
18
2.4
18
84
0
61
2
15
34
47
1.58
36316--36373
31
2.0
29
90
10
91
67
1
3
27
1.17
39028--39082
2
30.5
2
77
20
59
52
0
0
47
1.00
41582--41615
18
1.9
18
94
5
61
70
5
5
17
1.28
43210--43263
3
18.0
3
80
14
58
66
0
1
31
1.02
43207--43250
10
4.2
10
83
11
61
61
0
2
36
1.09
43419--43522
40
2.5
40
78
4
118
27
17
30
24
1.97
43446--43754
135
2.3
134
83
7
373
25
18
28
27
1.98
44695--44756
23
2.6
23
87
12
90
6
16
0
77
0.97
56597--56630
18
1.9
18
94
5
61
70
5
5
17
1.28
58225--58268
3
14.0
3
86
9
61
61
0
2
36
1.09
58222--58266
10
4.3
10
83
10
63
60
0
2
37
1.09
58225--58268
13
3.5
12
84
9
61
61
0
2
36
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64823--64861
17
2.1
20
86
13
57
35
2
0
61
1.10
66163--66198
13
2.6
14
86
13
56
44
2
0
52
1.15
67475--67524
22
2.3
22
92
0
82
34
18
34
14
1.90
87130--87168
15
2.6
15
79
0
51
74
0
2
23
0.94

Tables:   1

The End!