genome.fa.s4849.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004849.1 Hibiscus syriacus cultivar Beakdansim tig00010930_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88156

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4014--4044	16	1.9	16	93	0	53	48	0	0	51	1.00
6692--6731	2	20.0	2	100	0	80	50	0	0	50	1.00
7874--7901	2	14.0	2	100	0	56	50	0	0	50	1.00
10447--10497	21	2.4	21	80	6	68	21	25	19	33	1.97
10487--10538	21	2.5	21	87	3	70	38	17	23	21	1.93
10527--10600	20	3.7	20	87	0	85	29	24	20	25	1.99
11146--11199	20	2.7	20	97	0	99	38	25	22	12	1.90
11211--11264	14	3.5	14	75	22	54	11	22	20	46	1.82
12838--12921	41	2.0	42	88	2	125	19	15	42	22	1.88
13293--13404	20	5.7	20	89	2	154	38	23	23	15	1.92
13273--13404	40	3.3	40	82	3	133	38	24	20	16	1.92
13293--13404	60	1.9	59	88	1	170	38	23	23	15	1.92
13411--13474	19	3.6	19	72	20	66	12	18	21	46	1.82
14051--14095	18	2.5	18	88	0	72	15	13	42	28	1.85
15417--15458	19	2.2	20	86	4	59	52	21	19	7	1.69
15737--15780	22	2.0	22	95	0	79	18	15	45	20	1.85
15967--16080	20	5.7	20	80	6	113	24	17	25	32	1.97
15947--16082	41	3.3	41	80	6	177	24	16	24	34	1.95
16014--16102	41	2.2	40	82	8	99	23	16	22	37	1.94
16385--16446	26	2.4	26	88	0	88	37	9	0	53	1.34
19895--19939	23	2.0	23	86	0	63	26	28	24	20	1.99
19918--20222	149	2.0	149	98	0	583	34	20	16	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21632--21676	21	2.1	21	87	0	63	15	24	28	31	1.96
26166--26270	50	2.1	50	82	7	124	28	23	18	29	1.98
26651--26705	17	3.0	19	75	19	55	50	0	1	47	1.11
26721--26765	23	2.0	23	82	8	56	51	0	6	42	1.28
26837--26875	20	2.0	20	100	0	78	69	0	0	30	0.89
26876--26927	27	1.9	27	84	7	70	53	0	1	44	1.11
26930--26968	19	2.1	19	85	0	51	35	0	2	61	1.10
56575--56622	25	1.9	25	95	0	87	31	18	12	37	1.88
61448--61485	20	1.9	20	84	10	51	50	2	2	44	1.30
68663--69111	191	2.3	191	84	4	568	39	20	12	27	1.88
74512--74551	2	20.0	2	100	0	80	50	0	0	50	1.00
75009--75043	2	18.0	2	94	5	63	0	0	48	51	1.00
75043--75136	2	47.5	2	88	2	127	42	0	57	0	0.98
78229--78443	35	6.2	35	70	15	108	44	4	4	46	1.43
78271--78399	64	2.0	64	86	0	177	43	4	6	45	1.49
78335--78445	35	3.1	35	81	6	134	44	5	6	44	1.52
78407--78474	29	2.3	29	84	0	91	50	2	2	44	1.32
78190--78522	100	3.3	101	77	7	293	45	3	4	46	1.40
78438--78537	38	2.6	37	82	4	119	46	1	5	48	1.31
78438--78551	38	3.1	35	83	7	102	45	0	4	49	1.28
81662--81707	19	2.4	19	100	0	92	10	10	10	67	1.43
85112--86356	164	7.6	164	82	3	1396	30	24	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85112--86361	83	15.3	83	77	5	1058	30	24	19	25	1.98
86960--87288	33	9.8	32	73	20	187	44	3	5	46	1.45
86959--87115	37	4.3	37	74	17	116	43	3	7	46	1.46
87092--87149	28	2.2	24	80	16	71	43	5	5	46	1.48
87209--87300	37	2.6	37	80	16	106	46	1	4	47	1.29
87264--87306	22	2.0	21	86	4	59	37	0	6	55	1.27
87327--87378	13	4.0	13	80	9	52	21	3	1	73	1.10

Tables:   1

The End!