genome.fa.s485.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000485.1 Hibiscus syriacus cultivar Beakdansim tig00000925_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  155581

Tables:   1   

This is table  1  of  1  ( 100 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327--431	20	5.3	20	93	4	160	33	21	20	24	1.97
327--450	40	3.3	36	82	12	128	33	21	21	22	1.97
478--524	20	2.3	20	88	0	67	21	19	23	36	1.95
498--589	32	2.8	33	83	3	123	14	19	22	43	1.87
2446--2519	20	3.7	20	87	0	85	44	22	17	14	1.86
2865--2925	21	2.8	22	85	5	88	21	11	39	27	1.88
2865--2929	22	3.0	22	86	4	96	21	10	40	27	1.87
3098--3149	20	2.6	20	100	0	104	23	21	25	30	1.99
3138--3208	20	3.6	19	77	9	79	18	23	21	36	1.95
3118--3208	40	2.3	39	84	7	112	19	23	21	35	1.96
3205--3250	21	2.2	21	92	0	74	39	17	26	17	1.91
5491--5532	2	21.0	2	100	0	84	50	0	0	50	1.00
5949--5973	13	1.9	13	100	0	50	32	12	24	32	1.91
6140--6164	3	8.3	3	100	0	50	0	0	32	68	0.90
8077--8163	34	2.8	32	73	19	76	43	1	3	51	1.26
9860--9893	10	3.5	10	92	4	52	17	5	0	76	0.98
26845--26922	10	7.1	10	72	18	57	60	19	10	10	1.57
26857--26930	23	3.2	23	76	5	69	60	21	9	8	1.53
27528--27567	21	1.9	21	89	0	62	60	0	0	40	0.97
28575--28615	18	2.3	18	91	0	64	4	9	12	73	1.24
28648--28676	15	1.9	15	100	0	58	37	6	6	48	1.57
29659--29720	2	31.0	2	100	0	124	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29905--29971	23	2.9	23	80	4	82	17	16	26	38	1.91
32082--32130	20	2.3	21	82	6	64	40	8	20	30	1.81
32672--32734	25	2.4	28	82	12	89	46	0	0	53	1.00
32672--32743	25	2.9	23	78	15	72	43	0	0	56	0.99
32672--32767	27	3.7	27	78	9	76	41	1	1	56	1.13
37126--37169	14	3.3	14	75	12	56	38	4	2	54	1.33
37920--37945	2	13.0	2	100	0	52	50	0	0	50	1.00
39360--39393	14	2.3	15	90	5	52	64	0	8	26	1.22
39446--39474	12	2.3	13	94	5	51	68	0	17	13	1.20
41077--41117	16	2.6	16	82	17	50	56	0	0	43	0.99
41255--41280	1	26.0	1	100	0	52	0	0	0	100	0.00
41350--41391	20	2.1	20	90	0	66	33	16	23	26	1.96
41472--42186	105	6.8	105	98	0	1376	22	19	25	32	1.97
42929--43043	61	1.9	61	83	7	153	12	20	12	54	1.69
53648--53681	14	2.3	15	90	5	52	64	0	8	26	1.22
53736--53765	15	2.0	15	93	0	51	76	0	13	10	1.01
53779--53821	23	1.9	22	86	13	61	67	2	2	27	1.15
54304--54342	3	12.3	3	89	5	51	64	2	0	33	1.08
55414--55454	16	2.6	16	82	17	50	56	0	0	43	0.99
61600--61974	184	2.0	184	92	2	628	44	8	3	43	1.50
83338--83385	23	2.1	23	88	0	69	35	12	18	33	1.89
83728--83779	23	2.3	22	90	6	77	44	19	1	34	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83738--83800	23	2.7	23	90	0	90	38	19	6	36	1.77
84200--84286	39	2.2	39	95	0	156	17	13	20	48	1.81
84545--84581	18	2.1	18	89	0	56	51	10	5	32	1.60
84829--84879	25	2.0	25	92	0	84	39	19	7	33	1.81
85100--85138	20	2.0	20	89	0	60	48	10	15	25	1.76
85141--85192	23	2.3	22	90	6	77	44	19	1	34	1.62
85151--85213	23	2.7	23	90	0	90	38	19	6	36	1.77
85551--85612	22	2.7	23	85	5	81	37	19	6	37	1.78
84910--86096	403	3.0	403	97	1	2232	40	13	8	38	1.74
85953--86015	23	2.7	23	90	0	90	38	19	6	36	1.77
88542--89614	182	5.9	184	97	1	1980	33	16	15	35	1.90
88542--89614	365	2.9	367	96	1	1978	33	16	15	35	1.90
91076--91162	3	29.0	3	77	0	84	24	34	5	35	1.79
91076--91177	18	5.7	18	79	0	87	22	34	6	36	1.81
91084--91174	42	2.2	42	91	0	146	21	35	7	35	1.83
92629--94045	198	7.1	199	96	1	2625	32	15	15	37	1.88
94122--94169	19	2.6	18	90	3	69	56	10	2	31	1.45
95946--96011	33	2.0	33	87	0	96	24	45	1	28	1.62
98317--98362	20	2.4	18	79	13	56	19	17	8	54	1.68
99648--99733	36	2.5	33	74	25	90	47	4	0	47	1.22
104387--104443	20	2.8	21	81	5	71	47	22	14	15	1.82
105154--105284	31	4.3	29	67	17	70	45	0	5	49	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105254--105304	23	2.2	23	82	0	57	45	1	1	50	1.24
105472--105518	22	2.1	22	88	0	67	46	0	2	51	1.13
105513--105540	11	2.5	11	100	0	56	50	0	0	50	1.00
105484--105541	22	2.6	23	75	10	57	48	0	1	50	1.11
105514--105547	11	3.4	10	88	12	52	47	0	0	52	1.00
105419--105595	55	3.4	53	72	17	131	48	0	2	49	1.18
107808--107841	2	17.0	2	100	0	68	50	0	50	0	1.00
108010--108066	28	2.0	28	100	0	114	59	7	3	29	1.40
110328--110366	20	2.0	20	100	0	78	28	10	20	41	1.85
114116--114169	24	2.2	24	90	0	81	22	16	20	40	1.91
116631--116713	20	4.2	20	71	15	64	36	22	18	22	1.95
116697--116823	33	3.8	33	93	0	209	46	18	22	12	1.82
116677--116788	19	6.4	19	69	20	82	45	18	21	14	1.85
116677--116827	19	8.7	18	66	22	74	45	19	22	12	1.83
116833--116884	19	2.7	19	96	0	95	11	21	21	46	1.82
116991--117041	14	3.6	14	94	0	84	43	21	0	35	1.53
118405--118485	21	3.9	21	66	6	65	23	20	33	22	1.97
118390--118508	42	2.8	41	81	7	114	22	17	36	23	1.95
118901--119112	94	2.3	94	96	0	388	47	19	12	20	1.81
119389--119565	41	4.3	41	71	12	130	28	19	18	32	1.96
119389--119442	21	2.6	21	91	2	83	20	22	18	38	1.93
119439--119494	20	2.7	21	80	5	69	42	16	21	19	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119432--119504	21	3.5	21	79	3	76	36	17	21	23	1.94
119555--119607	21	2.5	22	81	6	74	33	18	26	20	1.96
119368--119607	123	1.9	123	88	2	365	30	19	20	29	1.97
124602--124678	22	3.6	22	94	3	131	32	29	19	18	1.95
124798--124858	6	10.5	6	94	5	108	32	50	16	0	1.45
125547--125585	6	6.5	6	96	0	69	2	12	51	33	1.54
125657--125764	20	5.4	20	87	4	137	22	25	18	34	1.96
125799--125852	20	2.7	20	94	0	90	11	18	18	51	1.74
125839--125889	19	2.6	20	90	3	77	15	17	23	43	1.88
132632--132657	2	13.0	2	100	0	52	50	0	50	0	1.00
137930--138044	58	2.0	59	84	5	153	34	12	10	42	1.76
150742--150783	2	21.0	2	100	0	84	50	0	0	50	1.00

Tables:   1

The End!