Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004851.1 Hibiscus syriacus cultivar Beakdansim tig00010934_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102917

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6663--6702
21
1.9
21
85
10
55
35
10
2
52
1.48
16133--16162
15
2.0
15
93
0
51
43
6
0
50
1.28
24194--24245
14
4.0
14
78
19
58
11
13
21
53
1.70
25326--25403
16
5.0
16
90
6
117
11
10
20
57
1.62
25347--25399
26
2.0
26
82
7
63
11
9
20
58
1.60
38387--38434
14
3.7
14
76
21
59
16
12
12
58
1.63
38696--38800
10
10.1
10
71
8
84
8
14
20
57
1.63
38698--38776
20
4.0
20
100
0
158
8
15
20
55
1.66
41008--41144
35
3.9
35
76
5
132
27
18
20
34
1.96
44863--44925
20
2.9
21
79
9
65
15
25
34
23
1.95
51322--51382
30
2.1
29
84
3
77
45
26
22
4
1.72
52089--52134
2
23.5
2
95
4
85
50
0
0
50
1.00
60898--60936
20
2.0
20
89
0
60
66
0
0
33
0.92
61587--61631
19
2.3
20
92
3
74
40
4
22
33
1.74
61836--61862
2
13.5
2
100
0
54
48
0
0
51
1.00
71369--71420
24
2.2
24
82
0
59
48
21
11
19
1.80
71385--71449
24
2.7
25
90
4
98
36
20
18
24
1.94
74097--74268
91
1.9
90
83
9
224
30
15
24
29
1.96
76883--76962
22
3.6
22
76
5
90
23
23
26
26
2.00
76861--76981
43
2.8
42
75
11
120
23
23
27
26
2.00
76887--76981
21
4.4
21
75
9
77
24
21
26
28
1.99
82450--82519
26
2.7
26
97
0
131
28
24
22
24
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82566--82604
20
2.0
20
89
0
60
20
15
33
30
1.94
86239--86548
140
2.2
141
88
1
453
32
20
22
24
1.98
87302--87373
36
2.0
36
91
5
119
25
26
13
34
1.93
92325--92380
24
2.3
24
96
0
103
30
16
16
37
1.90
92612--92657
20
2.3
20
85
7
67
4
23
28
43
1.73
98156--98186
13
2.4
13
88
0
53
25
12
16
45
1.83

Tables:   1

The End!