Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004852.1 Hibiscus syriacus cultivar Beakdansim tig00010936_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  178175

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1562--1604
16
2.7
16
96
0
77
58
0
30
11
1.34
6649--6683
16
2.2
16
100
0
70
22
11
25
40
1.88
8041--8083
18
2.4
17
82
17
52
23
16
0
60
1.35
19894--19976
44
1.9
43
92
2
139
65
14
13
7
1.47
24305--24347
23
1.9
21
81
13
50
34
13
18
32
1.90
29148--29192
21
2.1
21
91
0
72
0
6
15
77
0.96
29155--29203
11
4.5
11
84
5
64
2
8
10
79
1.01
29155--29202
21
2.3
21
88
0
69
2
8
10
79
1.02
34104--34183
35
2.2
37
88
4
119
31
36
5
27
1.78
34800--34850
16
3.2
16
80
2
59
15
19
0
64
1.29
38580--38659
35
2.2
37
86
4
110
31
35
5
28
1.79
40548--40594
11
4.1
12
75
8
53
72
4
10
12
1.25
40548--40594
23
2.1
21
88
7
67
72
4
10
12
1.25
40983--41064
43
1.9
43
82
9
105
57
8
2
31
1.42
42154--42180
9
3.0
9
100
0
54
55
11
11
22
1.66
44733--44777
22
2.1
22
84
12
58
4
8
13
73
1.23
44771--44796
10
2.6
10
100
0
52
0
0
7
92
0.39
45120--45166
11
4.1
12
75
8
53
72
4
10
12
1.25
45120--45166
23
2.1
21
88
7
67
72
4
10
12
1.25
45642--45687
22
2.0
22
83
12
56
52
13
2
32
1.52
50611--50649
18
2.2
18
85
0
51
46
35
5
12
1.65
57098--57140
20
2.2
20
87
8
61
2
23
2
72
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65094--65130
2
18.5
2
100
0
74
48
0
0
51
1.00
68710--68761
22
2.2
24
86
6
72
11
17
11
59
1.60
87406--87457
19
2.7
19
90
0
77
46
5
15
32
1.70
88087--88135
25
1.9
25
83
4
62
48
2
14
34
1.55
94652--94727
16
4.6
17
74
14
70
7
14
3
73
1.20
94665--94726
32
1.9
33
90
9
101
9
12
3
74
1.19
94964--95002
13
3.1
12
82
10
51
66
0
7
25
1.18
105106--105165
30
2.0
31
90
3
95
30
8
10
51
1.64
106789--106831
19
2.4
18
88
7
61
74
0
18
6
1.04
109239--109298
30
2.0
31
83
3
77
28
10
10
51
1.67
110137--110187
21
2.5
21
90
6
79
35
11
5
47
1.65
110600--110639
19
2.0
20
90
4
64
20
12
0
67
1.22
110877--110944
22
3.1
22
78
14
77
5
17
4
72
1.22
113047--113097
21
2.6
19
90
6
75
33
13
5
47
1.67
113509--113550
19
2.2
19
91
8
68
26
14
0
59
1.35
117086--117125
19
2.0
20
90
4
64
20
15
0
65
1.28
117127--117168
12
3.5
12
75
12
50
23
23
0
52
1.47
117126--117180
24
2.3
24
100
0
110
27
21
0
50
1.49
117139--117182
12
3.7
12
76
11
54
29
18
0
52
1.46
117438--117474
8
4.6
8
93
0
56
67
2
24
5
1.25
141246--141283
20
1.9
20
88
0
58
44
7
18
28
1.78
147240--147282
23
1.9
21
81
13
50
34
13
18
32
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
148564--148601
16
2.4
17
83
16
55
0
23
2
73
0.95
149407--149459
15
3.4
15
82
10
54
69
5
13
11
1.34
154849--154898
19
2.5
20
87
3
66
44
6
18
32
1.74
172154--172183
13
2.3
13
94
0
51
60
0
10
30
1.30
174966--175016
19
2.6
20
87
3
68
45
5
15
33
1.71

Tables:   1

The End!