genome.fa.s4853.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004853.1 Hibiscus syriacus cultivar Beakdansim tig00010943_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89524

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11655--11894	36	6.5	37	75	15	133	43	3	7	45	1.50
11680--11896	38	5.9	36	79	9	199	43	3	6	45	1.48
11681--11922	36	6.5	37	78	11	210	44	3	6	45	1.46
13243--13303	26	2.5	24	77	12	61	26	4	0	68	1.09
13242--13301	24	2.4	25	76	10	61	26	5	0	68	1.10
15068--15112	19	2.4	19	92	3	74	13	13	6	66	1.43
18501--19804	164	7.9	164	95	0	2241	31	23	20	24	1.98
20391--20605	36	5.8	37	75	18	132	44	3	6	45	1.47
20365--20607	38	6.5	37	77	10	203	43	3	7	46	1.48
20454--20515	25	2.6	24	71	16	65	41	0	8	50	1.32
20392--20632	38	6.5	37	78	11	208	44	3	6	45	1.45
22141--22177	6	6.2	6	87	0	56	35	2	0	62	1.10
22492--22525	18	1.9	18	88	5	52	32	2	0	64	1.08
24315--24354	19	2.2	18	86	4	53	40	0	2	57	1.12
41314--41363	23	2.1	25	85	7	68	30	12	2	56	1.47
42482--42519	2	19.5	2	94	5	69	47	0	0	52	1.00
46297--46339	22	2.0	22	81	9	52	30	6	4	58	1.45
50039--50079	21	2.0	21	85	9	57	51	19	7	21	1.71
52637--52721	30	2.8	30	84	7	93	60	5	11	22	1.53
53729--54027	131	2.3	129	86	3	431	25	19	32	22	1.98
54035--54192	66	2.4	66	82	2	174	25	17	21	34	1.95
54101--54694	121	4.8	123	74	14	474	25	17	23	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54767--54863	28	3.1	34	60	20	82	24	13	22	39	1.90
54715--54891	61	2.8	61	87	3	228	29	14	20	35	1.92
57638--57854	103	2.1	102	99	0	425	26	13	23	36	1.92
57866--57938	23	3.3	23	80	3	87	23	23	23	30	1.99
62125--62158	16	2.1	16	88	5	50	26	29	5	38	1.80
63314--63370	30	1.9	30	82	13	73	61	12	8	17	1.55
63345--63429	30	2.8	30	85	3	109	61	9	10	18	1.55
65986--66081	41	2.3	42	82	5	124	35	22	13	28	1.92
66138--66280	41	3.5	41	68	13	114	32	19	15	32	1.93
66102--66288	82	2.3	82	89	1	286	32	18	16	33	1.93
66140--66411	123	2.2	123	82	2	296	33	19	15	32	1.92
68852--68959	43	2.5	43	89	4	155	30	24	24	21	1.99
68938--68983	23	2.0	23	100	0	92	30	30	17	21	1.96
68940--68989	23	2.2	23	92	0	82	34	30	18	18	1.94
68961--69163	42	4.8	42	95	2	354	32	26	25	16	1.96
78181--78233	20	2.7	19	75	16	54	50	7	0	41	1.30
78202--78244	20	2.0	20	86	8	59	55	6	0	37	1.27
78477--78520	18	2.4	18	81	7	54	36	11	2	50	1.51

Tables:   1

The End!