genome.fa.s4855.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004855.1 Hibiscus syriacus cultivar Beakdansim tig00010945_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139161

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15071--15138	35	1.9	35	84	3	91	32	22	16	29	1.95
28082--28109	10	2.8	10	100	0	56	7	21	21	50	1.72
28491--28782	97	3.0	97	91	2	487	30	23	15	30	1.95
31351--31387	3	12.3	3	100	0	74	0	32	0	67	0.91
31832--31865	17	1.9	17	88	5	50	26	0	2	70	1.01
33540--33777	21	11.6	20	70	19	77	38	24	17	19	1.93
33603--33919	20	15.6	20	73	10	191	39	23	17	19	1.92
33679--33914	41	5.8	41	90	1	350	39	23	16	20	1.92
34794--34847	24	2.2	24	93	0	90	20	18	20	40	1.91
37260--37353	20	4.7	20	80	2	109	36	22	20	21	1.95
37358--37445	19	4.8	19	78	16	105	45	19	21	13	1.84
37305--37445	53	2.7	52	87	3	183	41	19	22	15	1.89
37455--37549	33	2.8	33	87	3	127	13	21	21	44	1.86
37651--37684	14	2.4	14	90	0	50	47	20	0	32	1.51
39068--39125	21	2.8	21	79	7	64	20	17	39	22	1.92
39607--39655	20	2.5	20	86	0	71	34	24	20	20	1.96
39688--39730	19	2.3	19	87	0	59	13	16	25	44	1.85
39818--40197	94	4.1	94	92	1	620	47	18	11	21	1.80
41692--41758	20	3.4	19	91	8	91	37	20	23	17	1.94
41803--41879	19	3.8	20	84	5	93	11	16	20	50	1.76
42438--42630	20	9.6	20	74	6	174	19	17	24	38	1.93
42440--42619	40	4.4	41	92	1	292	20	17	23	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47332--47408	23	3.6	21	76	13	68	49	0	0	50	1.00
47339--47418	21	3.7	21	75	11	56	46	0	0	53	1.00
56077--56126	22	2.2	23	89	3	75	28	26	18	28	1.98
57551--57593	22	1.9	23	85	4	61	58	0	0	41	0.98
57549--57599	22	2.3	23	75	3	59	49	0	0	50	1.00
58636--58840	21	9.9	20	69	11	83	28	21	17	31	1.96
58692--58855	41	4.0	41	67	12	120	31	20	17	30	1.95
58785--58840	20	2.7	21	83	5	78	25	19	17	37	1.94
58830--58941	20	5.6	20	79	4	118	38	19	19	22	1.94
58834--58923	41	2.2	41	84	2	110	42	16	20	21	1.89
59538--59659	14	7.6	14	69	24	73	9	23	22	43	1.83
59521--59680	33	4.8	33	96	0	266	10	23	22	43	1.84
61835--61901	21	3.2	21	66	6	55	23	35	20	19	1.95
61808--61901	42	2.2	42	81	7	102	22	35	21	21	1.96
63251--63286	14	2.6	14	95	0	63	30	0	25	44	1.54
63384--63527	19	8.4	19	70	23	122	46	18	19	15	1.84
63384--63508	33	3.8	33	90	2	171	46	19	19	15	1.84
63384--63508	66	1.9	66	88	3	189	46	19	19	15	1.84
63499--63561	33	1.9	33	87	6	92	49	22	15	12	1.79
63449--63577	19	7.3	19	73	21	102	47	22	16	13	1.82
63449--63560	52	2.2	52	100	0	224	48	21	16	13	1.81
63573--63723	19	8.7	19	64	21	80	13	22	19	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63577--63703	33	3.8	33	94	0	218	12	22	18	45	1.83
63697--63769	20	3.6	20	68	17	60	24	16	24	34	1.95
65024--65052	15	1.9	15	100	0	58	34	17	27	20	1.95
65039--65147	41	2.7	41	86	1	139	23	14	27	33	1.94
65021--65143	20	6.3	20	76	12	105	25	15	28	30	1.96
65133--65202	21	3.3	21	97	0	131	21	24	15	38	1.92
65077--65202	41	3.0	41	83	5	130	21	20	20	37	1.95
65132--65221	42	2.1	42	83	0	117	25	22	17	34	1.96
65192--65248	21	2.6	22	72	8	55	36	15	22	24	1.94
73981--74008	3	9.3	3	100	0	56	64	0	35	0	0.94
74842--74905	23	2.8	23	90	0	101	26	26	28	18	1.98
74916--75138	103	2.2	103	98	0	428	36	25	13	25	1.92
75890--76031	64	2.2	64	81	8	164	26	19	21	33	1.96
75973--76076	45	2.3	45	83	9	124	29	17	18	34	1.94
90561--90681	21	5.9	21	77	11	133	21	21	22	34	1.97
90587--90656	19	3.5	19	75	12	77	21	20	20	38	1.94
90568--90677	42	2.7	41	91	2	186	20	20	22	35	1.96
90568--90705	42	3.3	40	85	6	177	22	21	22	34	1.97
91837--92013	42	4.3	41	85	7	202	37	20	19	22	1.95
91879--91988	21	5.3	21	74	12	102	36	21	20	21	1.95
91836--91988	21	7.4	19	75	14	99	36	21	19	22	1.95
97137--97204	20	3.3	20	81	4	91	30	25	26	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97225--97303	21	3.8	21	79	15	92	20	20	34	25	1.96
97381--97438	30	2.0	29	90	10	91	44	17	5	32	1.70
97381--97440	29	2.0	30	93	6	104	43	16	6	33	1.74
100211--100280	34	2.1	32	89	5	104	24	30	14	31	1.94
100495--100533	20	1.9	21	89	5	62	15	10	35	38	1.81
100637--100701	21	3.1	21	80	8	80	24	27	27	20	1.99
100646--100719	20	3.7	20	83	3	94	29	22	28	18	1.98
100637--100719	41	2.0	41	88	4	123	27	25	27	19	1.99
100740--100818	22	3.8	21	82	15	92	21	18	35	24	1.96
100897--100954	30	2.0	29	86	10	82	44	15	5	34	1.69
100897--100956	29	2.0	30	90	6	95	43	15	6	35	1.72
104312--104399	45	2.0	45	86	4	124	29	23	25	21	1.99
111211--111271	20	3.0	21	78	4	79	14	27	37	19	1.91
111562--111613	3	17.3	3	100	0	104	67	0	0	32	0.91
111564--111646	9	8.9	9	87	10	50	66	1	0	32	1.00
111957--112141	24	7.6	24	91	1	271	34	23	20	22	1.97
111957--112141	74	2.5	73	89	1	282	34	23	20	22	1.97
111957--112141	49	3.8	48	88	2	271	34	23	20	22	1.97
113169--113193	13	1.9	13	100	0	50	48	20	0	32	1.50
117387--117429	22	2.0	22	95	0	77	25	27	20	25	1.99
120152--120229	7	11.3	7	80	2	86	46	33	1	19	1.58
120305--120334	14	2.1	14	93	0	51	43	0	6	50	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123272--123305	16	2.2	16	89	5	52	55	0	14	29	1.40
125242--125349	43	2.6	40	81	7	119	28	19	28	23	1.98
125514--125611	40	2.4	42	84	6	121	25	18	32	23	1.97
125277--125629	130	2.7	131	74	9	317	26	17	28	27	1.98
125701--125769	35	2.0	35	91	8	115	34	10	24	30	1.89
125731--125958	67	3.4	65	77	13	221	41	12	16	30	1.85
126042--126109	33	2.1	33	91	5	111	32	22	13	32	1.92
127067--127105	3	12.7	3	94	5	69	35	0	0	64	0.94
127670--127711	17	2.4	18	80	11	52	23	4	0	71	1.05

Tables:   1

The End!