genome.fa.s4856.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004856.1 Hibiscus syriacus cultivar Beakdansim tig00010947_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77214

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1909--1976	23	3.0	22	85	8	82	29	23	20	26	1.99
3598--3636	14	2.8	14	84	0	51	35	0	0	64	0.94
4042--4084	22	2.0	22	90	0	68	41	0	0	58	0.98
4274--4316	21	2.0	22	86	4	61	44	6	2	46	1.43
4279--4321	21	2.0	21	82	8	52	51	6	0	41	1.29
4470--4504	12	2.9	12	87	12	54	51	0	0	48	1.00
9019--9108	2	45.0	2	97	0	171	48	1	0	50	1.08
11633--11675	13	3.3	13	83	0	59	16	41	20	20	1.90
11611--11656	18	2.6	18	96	0	83	17	52	19	10	1.74
12988--13023	18	2.0	18	88	0	54	52	0	16	30	1.44
14225--14333	24	4.5	24	74	4	94	21	14	16	47	1.82
16406--16473	13	5.5	13	81	10	88	17	45	22	14	1.85
16402--16473	36	2.0	36	91	0	117	18	47	20	13	1.82
17795--17830	18	2.0	18	88	0	54	52	0	16	30	1.44
18925--19024	24	4.2	24	75	10	87	22	13	17	48	1.81
21084--21108	13	1.9	13	100	0	50	16	40	24	20	1.91
21306--21338	17	2.0	17	88	5	50	42	21	9	27	1.83
22429--22464	18	2.0	18	88	0	54	52	0	16	30	1.44
23665--23766	24	4.2	24	72	5	80	21	13	16	48	1.81
23933--23963	2	15.5	2	100	0	62	48	0	0	51	1.00
25013--25065	28	2.0	27	85	7	72	64	1	9	24	1.34
25541--26001	2	219.5	2	65	23	132	43	5	4	46	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25541--26001	7	73.2	6	69	20	132	43	5	4	46	1.47
25528--26001	20	23.7	19	69	19	172	43	5	4	46	1.47
25500--25600	42	2.5	39	82	7	105	42	5	3	47	1.46
25526--25651	27	4.6	27	74	17	91	43	6	3	46	1.45
25610--25966	27	12.9	27	67	17	157	44	5	4	46	1.45
25576--25993	27	16.0	26	67	24	138	43	5	4	46	1.47
25919--26001	25	3.2	25	70	16	53	42	3	3	50	1.37
26562--26591	12	2.5	12	94	0	51	26	0	0	73	0.84
26751--26800	16	3.2	16	80	11	59	48	6	2	44	1.39
26751--26836	30	3.0	29	81	10	79	47	6	4	40	1.51
27487--27519	14	2.4	14	94	0	57	60	6	3	30	1.36
27502--27564	18	3.3	18	70	12	54	52	4	0	42	1.22
27710--27760	16	3.2	16	82	0	75	37	15	23	23	1.93
28748--28787	21	1.9	22	90	10	66	12	10	40	37	1.77
28843--28898	3	18.0	3	78	7	58	41	0	0	58	0.98
30208--30243	18	2.0	18	88	0	54	27	0	2	69	1.02
30359--30714	137	2.7	125	81	13	393	34	8	10	45	1.70
30478--30713	125	1.9	122	88	7	352	34	8	10	45	1.70
31402--31456	17	3.2	17	100	0	110	21	18	20	40	1.92
38290--38515	114	2.0	114	90	0	353	33	15	20	30	1.93
40800--40854	22	2.5	22	90	0	92	36	10	12	40	1.79
41491--42282	76	10.5	76	97	0	1500	23	19	22	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42415--42476	3	20.0	3	80	6	70	40	0	0	59	0.97
43947--44329	121	3.0	119	71	20	296	35	8	9	46	1.68
45131--45193	19	3.3	19	78	12	74	49	11	11	28	1.72
45131--45193	18	3.3	18	80	12	72	49	11	11	28	1.72
48097--48136	21	1.9	22	90	10	66	10	12	40	37	1.77
51460--51529	28	2.4	28	92	4	113	50	17	12	20	1.78
56817--56853	20	1.9	19	89	10	58	45	10	24	18	1.81
56969--57007	17	2.2	18	86	4	53	46	2	5	46	1.38
57000--57067	35	1.9	36	88	8	104	47	4	0	48	1.22
60484--60530	2	23.5	2	100	0	94	0	48	0	51	1.00
66262--66542	138	2.0	137	86	2	393	28	13	17	40	1.88

Tables:   1

The End!