genome.fa.s4857.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004857.1 Hibiscus syriacus cultivar Beakdansim tig00010949_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110801

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56--91	2	18.0	2	94	0	63	50	2	0	47	1.15
8968--9019	4	13.0	4	100	0	104	25	0	25	50	1.50
18315--18407	3	30.7	3	87	6	134	2	35	0	62	1.07
19235--19330	31	3.1	31	86	0	138	37	7	13	41	1.72
19944--20000	22	2.6	22	86	10	82	52	0	1	45	1.11
19929--20003	11	7.2	10	73	18	55	49	1	1	48	1.18
21687--21716	15	2.0	15	100	0	60	53	6	6	33	1.53
22287--22313	14	1.9	14	100	0	54	55	0	0	44	0.99
28905--28942	20	1.9	20	88	0	58	65	2	2	28	1.19
31135--31267	47	3.0	45	91	6	216	27	14	15	43	1.84
41461--41530	6	12.0	6	77	6	54	25	1	18	54	1.52
41461--41539	24	3.4	24	77	3	72	27	2	17	51	1.58
41483--41530	12	4.0	12	83	0	60	22	0	20	56	1.43
52813--53060	130	1.9	130	90	0	397	37	14	12	35	1.84
52827--53091	130	2.0	129	79	4	282	40	13	12	33	1.82
53389--53451	28	2.3	27	78	8	63	46	1	3	49	1.27
53531--53564	16	2.0	18	88	11	54	64	5	2	26	1.30
54058--54108	21	2.4	21	80	0	57	45	25	0	29	1.54
57450--57509	29	2.0	29	90	3	93	40	6	18	35	1.77
57458--57509	15	3.5	15	78	5	61	42	5	17	34	1.73
57847--57897	24	2.1	24	82	10	59	54	1	0	43	1.11
57927--57974	25	1.9	25	83	8	62	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57861--57983	53	2.3	54	77	14	125	48	0	0	49	1.12
57923--57999	23	3.4	22	75	13	59	50	0	0	49	1.00
57837--57989	84	1.9	81	80	16	181	50	0	0	48	1.10
58183--58262	42	1.9	42	89	5	126	52	15	13	18	1.75
65399--65437	18	2.2	18	90	0	60	38	7	2	51	1.44
65503--65647	41	3.8	38	77	16	122	44	4	6	44	1.48
65576--65600	12	2.1	12	100	0	50	40	8	8	44	1.63
65503--65650	79	1.9	76	82	8	181	44	4	6	45	1.47
65448--65642	34	5.2	36	74	14	130	45	3	6	45	1.46
65600--65753	52	3.0	53	80	10	160	40	3	8	47	1.52
65678--65728	21	2.5	22	84	12	72	41	5	7	45	1.57
65696--65791	36	2.8	34	76	13	97	40	4	8	46	1.53
65828--65881	20	2.8	19	83	10	65	25	0	0	74	0.83
65836--65878	15	2.9	15	92	0	68	25	0	0	74	0.82
65835--65874	10	4.0	10	93	0	62	30	0	0	70	0.88
67354--67380	6	4.5	6	100	0	54	44	0	0	55	0.99
67949--67993	17	2.6	17	89	0	72	37	6	26	28	1.82
76388--76416	2	14.5	2	100	0	58	48	0	0	51	1.00
77285--77727	228	2.0	222	92	4	737	44	8	7	39	1.62
77793--77838	20	2.3	19	89	10	74	54	10	17	17	1.70
77969--78008	20	2.2	18	86	13	55	55	12	15	17	1.70
80317--80381	33	2.0	33	87	3	96	29	0	47	23	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82154--82192	18	2.2	18	86	9	53	30	2	10	56	1.46
82312--83264	194	4.9	197	95	3	1704	36	17	15	30	1.91
82312--83264	391	2.5	392	95	3	1709	36	17	15	30	1.91
84675--84764	3	30.0	3	80	0	99	34	5	34	25	1.79
85840--86527	183	3.8	183	95	2	1192	35	14	16	33	1.89
85840--86528	363	1.9	362	94	2	1220	35	14	16	33	1.89
86521--86566	22	2.0	23	91	4	76	30	10	13	45	1.77
89670--89732	23	2.7	23	90	0	90	36	7	17	38	1.79
89670--89742	23	3.2	23	86	3	85	34	6	19	39	1.78
89745--89783	20	2.0	20	89	0	60	25	15	10	48	1.76
89887--89951	29	2.2	28	84	10	78	52	4	0	43	1.22
90095--90158	23	2.8	23	87	0	92	35	6	20	37	1.78
90095--90167	23	3.2	23	82	7	85	34	5	20	39	1.76
90170--90208	20	2.0	20	89	0	60	25	15	10	48	1.76
90523--90585	22	2.8	23	82	4	74	34	6	19	39	1.77
90523--90599	23	3.5	22	81	10	68	33	5	19	41	1.74
89571--91258	426	3.9	430	97	1	3141	39	8	12	39	1.74
90950--91011	22	2.7	23	87	5	90	38	6	17	37	1.76
90950--91021	23	3.2	22	88	4	90	36	5	19	38	1.75
91290--91340	25	2.0	25	92	0	84	33	7	19	39	1.81
91588--91624	18	2.1	18	89	0	56	32	5	10	51	1.60
91880--92003	38	3.2	39	93	3	216	48	20	12	18	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92407--92470	23	2.8	23	87	0	92	35	6	20	37	1.78
92407--92479	23	3.2	23	82	7	85	34	5	20	39	1.76
94369--94396	14	2.0	14	100	0	56	50	7	0	42	1.30
97462--97497	18	1.9	19	94	5	65	44	11	5	38	1.63

Tables:   1

The End!