genome.fa.s4859.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004859.1 Hibiscus syriacus cultivar Beakdansim tig00010957_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60796

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
671--723	20	2.7	19	75	16	54	50	7	0	41	1.30
692--734	20	2.0	20	86	8	59	55	6	0	37	1.27
972--1015	18	2.4	18	81	7	54	36	11	2	50	1.51
26245--26291	20	2.3	20	92	0	76	36	23	19	21	1.95
26300--26367	20	3.4	20	85	0	91	29	23	16	30	1.96
26285--26400	40	2.9	40	75	8	119	32	23	14	29	1.94
26200--26332	60	2.2	61	80	6	155	35	24	15	24	1.94
26299--26431	40	3.3	39	76	11	117	31	22	13	32	1.93
26378--26432	20	2.8	20	81	10	76	30	23	10	34	1.89
26425--26473	18	2.6	19	83	9	64	30	20	12	36	1.89
26609--26647	16	2.5	16	87	4	53	30	5	0	64	1.15
27384--27430	24	2.0	24	95	0	85	27	21	17	34	1.95
27389--27435	24	1.9	24	91	4	76	25	21	17	36	1.94
30104--30153	25	2.0	25	96	0	91	26	8	22	44	1.80
31172--31332	64	2.5	63	84	6	191	36	19	19	25	1.95
32011--32074	30	2.1	30	85	0	83	18	18	28	34	1.95
33222--33382	64	2.5	63	84	6	191	36	19	19	25	1.95
34061--34124	30	2.1	30	85	0	83	18	18	28	34	1.95
35018--35070	24	2.2	24	86	0	70	33	3	13	49	1.60
36232--36267	18	2.0	18	88	0	54	52	25	2	19	1.59
36438--36494	29	2.0	29	96	0	105	26	15	26	31	1.96
47654--47685	16	2.0	16	100	0	64	50	0	6	43	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53899--53955	13	4.1	13	78	14	60	40	5	0	54	1.23
56329--56393	23	2.8	24	79	9	80	63	12	9	15	1.52
57033--57082	24	2.0	25	88	7	75	52	10	8	30	1.64
57042--57091	24	2.2	23	86	10	68	58	10	6	26	1.54
59016--59044	14	2.0	15	93	6	51	62	27	3	6	1.37
59377--59420	21	2.1	21	82	0	52	34	15	38	11	1.84

Tables:   1

The End!