Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000486.1 Hibiscus syriacus cultivar Beakdansim tig00000928_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73556

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5961--6019
25
2.4
25
80
8
68
32
6
32
28
1.83
9829--9895
21
3.2
21
93
0
116
28
25
16
29
1.97
27661--27703
18
2.5
17
85
7
61
67
2
4
25
1.22
28853--29407
105
5.3
105
94
2
897
21
18
27
32
1.96
29975--30464
73
7.2
66
73
13
271
38
11
19
30
1.87
30142--30404
36
7.4
36
79
10
274
40
13
18
26
1.88
30092--30470
138
2.8
136
85
3
483
40
12
18
28
1.87
30178--30362
102
1.8
102
90
2
300
40
14
17
28
1.88
30898--30931
17
2.0
17
94
0
59
44
29
5
20
1.75
31343--31391
22
2.2
22
92
0
80
28
14
24
32
1.94
31355--31398
22
2.0
22
86
0
61
31
13
22
31
1.93
32027--32115
24
3.8
22
75
15
72
2
12
7
77
1.07
32041--32122
16
5.1
16
74
18
57
1
13
8
76
1.06
33837--33876
18
2.2
18
100
0
80
35
12
32
20
1.90
35926--35955
2
15.0
2
92
0
51
53
0
0
46
1.00
36145--36202
3
20.3
3
83
13
52
72
0
3
24
1.00
36456--36498
18
2.5
17
85
7
61
67
2
4
25
1.22
37470--37498
15
1.9
15
100
0
58
51
0
0
48
1.00
39259--39324
30
2.2
30
97
0
123
50
9
18
22
1.75
40290--40325
17
2.0
19
89
10
58
41
0
0
58
0.98
40282--40334
19
2.7
19
77
16
56
45
0
1
52
1.11
40706--40831
38
3.3
38
90
0
189
30
26
11
31
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41870--41943
29
2.6
29
91
0
121
16
28
35
20
1.94
42261--42288
14
2.0
14
100
0
56
28
35
28
7
1.84
42275--42328
20
2.7
20
85
0
81
29
33
25
11
1.91
42315--42373
23
2.6
23
88
0
91
25
27
32
15
1.95
42339--42421
33
2.5
33
92
0
130
26
25
38
9
1.86
42637--42699
7
8.7
7
80
13
74
84
0
3
12
0.75
42635--42699
22
3.0
21
82
8
85
84
0
3
12
0.73
42636--42699
8
8.6
8
81
10
66
84
0
3
12
0.74
42637--42702
13
5.2
13
81
9
82
83
0
3
13
0.76
42634--42699
31
2.2
29
86
5
87
83
0
3
13
0.76
48850--48913
30
2.1
30
100
0
128
39
3
25
32
1.71
67182--67229
23
2.1
23
96
0
87
35
18
12
33
1.89
67961--68008
24
2.1
24
88
7
73
85
2
8
4
0.80
67965--68008
8
5.6
8
83
2
54
86
2
9
2
0.75
67959--68014
24
2.2
24
81
6
67
82
3
7
7
0.95
67968--68014
21
2.2
22
85
11
62
82
4
8
4
0.91
67949--68008
30
2.0
29
83
3
75
81
1
8
8
0.93
67966--68031
30
2.2
30
78
10
64
81
4
6
7
0.97
67997--68041
23
2.0
22
87
12
65
75
6
0
17
1.01
68473--68505
17
1.9
17
100
0
66
30
6
18
45
1.73
70007--71073
549
1.9
543
91
4
1754
29
15
20
33
1.94
71554--71605
20
2.5
21
78
12
54
32
21
17
28
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72425--72458
17
1.9
18
94
5
61
17
20
35
26
1.95

Tables:   1

The End!