genome.fa.s4860.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004860.1 Hibiscus syriacus cultivar Beakdansim tig00010966_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77708

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2579--2612	15	2.3	15	94	0	59	44	17	2	35	1.64
9785--9931	60	2.5	59	78	3	152	16	26	35	21	1.94
10144--10193	18	2.9	18	71	20	52	32	4	2	62	1.25
11903--11969	23	2.9	23	81	2	80	19	19	26	34	1.96
11935--11982	23	2.1	23	92	0	78	22	14	29	33	1.94
11974--12036	24	2.6	24	97	0	117	19	25	20	34	1.96
19939--19974	18	1.9	19	88	5	56	5	13	8	72	1.27
21744--21799	24	2.3	24	81	6	60	21	23	25	30	1.99
21976--22055	30	2.7	30	94	0	133	51	3	0	45	1.19
26094--26136	23	2.0	21	86	9	59	25	0	0	74	0.82
32695--32735	19	2.0	20	90	9	66	31	9	21	36	1.86
32943--33004	27	2.3	27	94	0	106	27	25	19	27	1.99
39770--39815	21	2.2	21	84	3	67	50	0	0	50	1.00
47961--47996	15	2.4	15	90	0	54	38	2	0	58	1.13
47992--48040	23	2.1	23	85	14	66	22	10	0	67	1.20
50229--50282	24	2.2	24	83	9	65	53	11	1	33	1.47
50608--50671	21	3.0	21	88	4	101	26	23	26	23	2.00
50944--50972	14	2.0	15	93	6	51	13	13	13	58	1.63
56480--56512	16	2.1	16	100	0	66	36	0	18	45	1.49
59660--59734	37	2.0	37	100	0	150	45	16	10	28	1.80
63439--63495	26	2.1	27	83	3	71	31	8	12	47	1.72
63568--63612	22	2.0	23	83	8	58	55	0	2	42	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63569--63649	35	2.4	34	80	12	85	54	1	2	41	1.21
66537--66570	18	1.9	17	88	5	50	17	20	29	32	1.96
73909--73947	21	1.9	20	84	5	51	35	15	15	33	1.89

Tables:   1

The End!