genome.fa.s4861.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004861.1 Hibiscus syriacus cultivar Beakdansim tig00010967_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131178

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1011--1039	15	1.9	15	100	0	58	31	6	48	13	1.69
1177--1243	33	2.0	33	97	0	125	28	0	46	25	1.53
2987--3035	19	2.6	19	96	0	89	32	2	10	55	1.45
3324--4435	393	2.9	388	79	10	1173	36	14	16	32	1.89
7251--7287	18	2.1	18	89	0	56	32	5	10	51	1.60
7243--7295	24	2.2	24	86	0	70	35	3	13	47	1.61
7522--8280	199	3.8	195	85	6	983	39	13	14	32	1.85
11906--12435	200	2.7	198	84	4	656	40	13	15	31	1.86
12430--12592	87	1.9	87	93	2	283	31	15	12	39	1.85
16766--16807	20	2.1	20	90	0	66	47	21	0	30	1.51
18727--18759	2	16.5	2	93	0	57	45	0	3	51	1.16
19354--19427	32	2.4	31	78	12	82	59	1	4	35	1.25
19746--19782	2	18.5	2	100	0	74	51	0	0	48	1.00
21236--21365	20	6.5	20	76	7	120	24	24	11	39	1.88
21195--21324	60	2.1	60	81	5	145	28	21	13	36	1.91
21257--21430	40	4.2	40	84	5	197	24	23	13	38	1.91
21210--21344	60	2.2	62	81	2	166	26	22	11	39	1.88
21327--21383	20	2.8	20	70	19	55	28	21	12	38	1.89
21562--21609	22	2.2	22	88	0	69	18	45	14	20	1.85
29853--29916	20	3.2	20	81	0	92	17	15	15	51	1.77
29877--29945	34	2.0	34	83	5	86	18	13	21	46	1.83
29857--29979	54	2.3	54	80	6	135	19	13	22	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29910--29971	20	3.1	20	79	9	72	19	11	25	43	1.84
29903--29979	13	5.8	13	74	10	57	19	11	28	40	1.87
30393--30435	2	21.5	2	100	0	86	51	0	0	48	1.00
34248--34372	21	6.0	21	74	9	103	27	13	38	20	1.90
34248--34357	42	2.6	42	78	16	120	27	14	38	20	1.91
34704--34915	21	10.1	21	84	4	248	34	32	12	20	1.90
34704--34915	63	3.4	63	86	1	282	34	32	12	20	1.90
35017--35179	42	4.0	41	89	4	199	21	14	39	25	1.91
35344--35374	2	15.5	2	100	0	62	48	0	0	51	1.00
37415--37544	60	2.2	60	83	5	156	36	13	22	26	1.92
37488--37566	40	2.0	40	84	0	104	40	16	18	24	1.91
51408--51433	12	2.2	12	100	0	52	53	0	0	46	1.00
53896--53943	17	2.8	17	96	0	87	33	18	4	43	1.69
55882--55941	23	2.7	22	87	10	79	28	26	21	23	1.99
62934--62995	23	2.7	23	87	0	79	35	25	17	20	1.95
68380--68437	23	2.5	23	86	10	82	72	3	6	17	1.21
68713--68738	13	2.0	13	100	0	52	23	30	23	23	1.99
71700--71797	22	4.5	22	85	0	115	24	23	20	31	1.98
71982--72016	15	2.2	16	90	5	54	54	20	0	25	1.45
82514--82580	29	2.2	30	78	17	68	41	2	1	53	1.25
82527--82582	28	2.0	29	82	10	71	37	1	0	60	1.07
82923--82974	6	8.7	6	100	0	104	32	0	50	17	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87279--87313	13	2.8	13	86	4	54	68	22	0	8	1.16
88370--88419	3	15.3	3	84	15	64	0	36	0	64	0.94
89273--89316	3	13.3	3	86	13	52	68	0	31	0	0.90
89275--89317	7	6.3	7	82	12	54	69	0	30	0	0.88
89278--89317	21	1.9	21	90	10	64	70	0	30	0	0.88
95058--95107	15	3.2	16	72	8	50	28	14	8	50	1.70
99877--99914	2	19.0	2	100	0	76	50	0	0	50	1.00
100151--100179	6	4.8	6	100	0	58	51	0	13	34	1.42
100881--100942	22	2.9	20	72	13	52	62	1	11	24	1.37
102005--102058	13	4.1	14	79	13	62	72	0	5	22	1.05
102011--102058	4	11.5	4	79	16	53	72	0	4	22	1.01
102146--102197	2	26.5	2	96	3	97	50	0	0	50	1.00
102185--102331	36	4.1	37	82	12	173	42	10	2	44	1.52
102218--102416	36	5.6	36	78	10	112	42	10	4	43	1.58
102741--103317	201	2.9	200	83	3	719	26	22	18	32	1.97
120575--120605	15	2.1	15	100	0	62	12	35	12	38	1.82
124193--124220	12	2.3	12	100	0	56	78	0	0	21	0.75
124247--124469	36	5.9	37	72	19	110	44	8	1	44	1.43
124271--124366	47	2.1	47	86	9	135	43	6	1	48	1.34
124321--124509	35	5.4	33	82	9	207	43	10	1	44	1.47
127360--127412	23	2.3	22	90	6	79	45	15	22	16	1.85
128676--128782	32	3.4	31	81	8	119	21	25	25	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128692--128783	32	2.9	31	83	4	121	20	27	25	27	1.99
128687--128803	32	3.7	32	78	10	96	20	24	24	29	1.99
128692--128822	64	2.0	64	80	8	142	20	25	23	30	1.99

Tables:   1

The End!