genome.fa.s4864.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004864.1 Hibiscus syriacus cultivar Beakdansim tig00010970_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79539

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15339--15365	14	1.9	14	100	0	54	40	22	14	22	1.90
15733--15854	43	2.8	43	89	0	181	31	30	15	22	1.95
15896--16099	110	1.9	110	87	0	300	36	22	16	25	1.94
16885--16914	13	2.3	13	100	0	60	40	0	6	53	1.27
18432--18481	25	2.0	25	88	0	73	14	26	20	40	1.90
19835--19866	2	16.0	2	93	0	55	53	0	0	46	1.00
19855--19902	17	2.9	16	72	9	51	43	4	0	52	1.20
19952--19980	2	14.5	2	100	0	58	48	0	0	51	1.00
20042--20086	23	2.0	23	86	8	65	26	6	2	64	1.30
20172--20213	13	3.2	13	86	0	57	16	4	4	73	1.17
20194--20247	26	2.1	25	83	10	65	14	7	3	74	1.18
21463--21514	21	2.5	20	75	3	50	40	17	25	17	1.90
21555--21596	20	2.1	20	86	0	57	30	26	14	28	1.95
22150--22194	19	2.4	19	92	0	72	48	26	15	8	1.74
22190--22360	19	9.1	19	80	12	174	13	21	21	43	1.86
22190--22360	39	4.6	38	77	13	174	13	21	21	43	1.86
22295--22360	20	3.4	19	80	12	55	15	24	16	43	1.86
24361--24483	42	2.9	42	80	2	122	22	36	17	22	1.95
24417--24483	21	3.2	21	66	6	55	23	35	20	19	1.95
25842--25877	14	2.6	14	95	0	63	30	0	25	44	1.54
26056--26173	19	6.7	19	66	19	76	13	23	20	42	1.88
26060--26153	33	2.8	33	98	0	179	12	24	19	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28448--28472	12	2.1	12	100	0	50	0	28	0	72	0.86
29759--29809	20	2.5	20	93	0	84	33	23	23	19	1.97
29839--29911	14	4.5	15	74	22	60	13	20	19	46	1.83
29835--29901	18	3.8	19	83	16	92	13	22	17	46	1.83
30018--30054	14	2.6	14	86	0	56	48	21	0	29	1.50
31466--31547	42	2.0	42	87	0	119	21	13	42	21	1.87
31916--31982	19	3.5	19	83	4	89	37	23	23	14	1.93
31971--32028	14	3.9	14	79	16	71	48	25	17	8	1.75
31955--32033	32	2.4	33	95	2	142	46	24	18	10	1.80
32040--32103	19	3.7	18	72	21	64	12	18	21	46	1.82
32089--32131	20	2.2	20	87	4	61	18	23	20	37	1.94
32097--32142	20	2.3	20	88	0	65	15	21	26	36	1.93
32614--32658	18	2.5	18	88	0	72	15	13	42	28	1.85
33978--34015	20	1.9	20	88	0	58	50	21	15	13	1.78
34270--34313	22	2.0	22	95	0	79	18	15	45	20	1.85
34501--34594	20	4.7	20	80	2	89	23	18	24	34	1.96
34481--34595	20	5.7	20	78	5	88	23	17	23	35	1.95
34523--34657	41	3.3	41	81	4	130	20	21	20	37	1.94
34584--34676	20	4.6	20	78	4	96	18	24	18	38	1.92
34584--34679	41	2.3	41	98	0	183	18	23	17	39	1.92
42885--42927	22	2.0	22	100	0	86	18	23	20	37	1.94
43217--43609	59	6.7	59	92	2	652	34	19	11	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43953--44010	22	2.8	21	79	7	66	25	27	13	32	1.94
44032--44089	22	2.8	21	82	7	73	29	25	13	31	1.94
43941--44164	95	2.4	95	86	1	306	28	24	14	32	1.95
44973--45021	23	2.1	24	88	3	73	32	2	12	53	1.50
48145--48255	56	2.0	56	100	0	222	36	10	19	32	1.87
48714--48758	20	2.2	20	80	11	56	28	8	17	44	1.79
48721--48767	20	2.3	20	89	7	69	25	10	14	48	1.76
49307--49354	18	2.6	19	80	9	64	79	0	14	6	0.92
50253--50302	24	2.0	25	84	7	66	36	2	8	54	1.42
51377--51490	45	2.6	45	94	2	196	32	11	26	29	1.91
51736--51774	17	2.2	18	90	4	62	5	23	0	71	1.05
52251--52289	20	2.0	20	89	0	60	28	12	15	43	1.83
52364--52412	20	2.5	20	77	9	55	34	16	20	28	1.94
60270--60310	2	20.5	2	100	0	82	48	0	0	51	1.00
61967--62022	21	2.7	21	97	0	103	19	28	28	23	1.98
64572--64616	22	2.0	22	91	8	74	57	4	4	33	1.38
67685--67709	7	3.6	7	100	0	50	60	24	0	16	1.36
67975--68028	27	2.0	27	89	7	83	35	0	24	40	1.55
69622--69647	2	13.0	2	100	0	52	50	0	0	50	1.00
69651--69691	19	2.2	19	90	0	64	26	34	19	19	1.96
69811--69844	2	17.0	2	100	0	68	50	0	0	50	1.00

Tables:   1

The End!