Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004865.1 Hibiscus syriacus cultivar Beakdansim tig00010971_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76869

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13439--13486
25
1.9
25
82
0
60
37
33
2
27
1.69
13392--13513
51
2.4
51
79
2
120
35
32
3
28
1.74
14170--14219
21
2.3
22
93
3
84
32
4
10
54
1.52
15399--15441
14
3.1
14
82
0
50
51
9
16
23
1.73
16192--16229
17
2.2
18
85
4
51
71
2
0
26
1.00
16174--16229
27
2.2
25
77
22
64
66
1
1
30
1.12
16402--16451
18
2.8
17
82
11
55
58
18
10
14
1.63
16878--17012
67
2.0
67
97
0
252
41
5
16
37
1.71
17173--17209
16
2.3
16
95
0
65
43
21
2
32
1.67
18954--19073
31
3.9
31
80
12
138
25
18
18
37
1.93
19776--20077
149
2.0
149
95
0
541
34
20
15
29
1.93
20178--20205
14
2.0
14
100
0
56
35
28
7
28
1.84
20624--20665
2
21.0
2
100
0
84
50
0
0
50
1.00
21610--21651
21
2.0
21
85
0
57
16
26
28
28
1.97
24948--25262
149
2.1
149
95
1
560
34
21
16
27
1.95
25363--25390
14
2.0
14
100
0
56
35
28
7
28
1.84
25809--25864
2
28.0
2
100
0
112
50
0
0
50
1.00
36823--36946
34
3.8
34
72
20
120
41
10
16
31
1.82
37233--37265
13
2.3
15
90
10
52
24
6
3
66
1.28
37309--37378
22
3.2
22
74
9
56
35
4
1
58
1.26
48585--49031
105
4.3
105
79
9
452
32
25
20
21
1.97
48727--48985
98
2.6
98
82
5
295
33
25
21
19
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49581--49705
34
3.8
34
73
19
129
42
10
16
31
1.81
50062--50100
15
2.7
15
84
4
53
23
5
2
69
1.21
61047--61145
42
2.4
41
84
1
126
25
22
24
28
1.99
60921--61544
257
2.5
250
88
3
919
34
15
16
33
1.91
61308--61411
41
2.5
42
81
4
122
25
21
22
30
1.98
61537--61695
79
2.0
81
81
2
187
40
20
16
21
1.91
61908--61964
3
19.3
3
96
3
107
35
0
0
64
0.93
67040--67098
19
3.1
19
79
16
59
57
5
0
37
1.21
67063--67131
17
3.6
17
73
22
57
50
8
1
39
1.42
67136--67165
15
2.0
15
100
0
60
46
6
6
40
1.56
67151--67195
24
1.9
24
95
4
83
42
6
4
46
1.50
67077--67216
39
3.6
39
91
4
223
45
9
2
42
1.51
67175--67208
14
2.4
14
90
5
50
47
8
2
41
1.50
67050--67232
20
9.5
19
67
28
68
47
8
2
42
1.45
72331--72403
24
3.0
24
79
0
92
24
15
23
36
1.93
76088--76136
13
3.7
13
78
10
55
65
0
4
30
1.11
76671--76699
13
2.1
14
93
6
51
17
6
20
55
1.65

Tables:   1

The End!