genome.fa.s4866.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004866.1 Hibiscus syriacus cultivar Beakdansim tig00010974_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66553

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1815--1879	29	2.2	29	91	8	105	40	21	20	18	1.92
2731--2775	21	2.1	21	87	0	63	15	24	28	31	1.96
9075--9131	19	3.0	19	94	0	96	35	26	5	33	1.79
10229--10285	29	2.0	29	89	0	87	22	28	29	19	1.98
10583--10620	9	4.2	9	83	10	51	31	2	0	65	1.06
10637--10721	39	2.2	39	95	0	152	37	2	16	43	1.61
11078--11117	21	1.9	21	100	0	80	27	0	15	57	1.38
11298--11387	30	3.1	30	87	6	123	42	1	12	44	1.49
11331--11411	22	3.3	22	71	23	72	45	0	12	41	1.41
11310--11417	30	3.9	29	78	20	124	43	0	11	44	1.46
11338--11388	15	3.3	16	72	10	61	45	0	13	41	1.44
11745--11817	20	3.7	20	88	0	110	27	27	19	26	1.99
11971--12011	12	3.6	12	77	9	50	17	46	7	29	1.74
12153--12190	20	1.9	20	94	0	67	39	23	21	15	1.92
12394--12430	14	2.6	14	86	0	56	48	21	0	29	1.50
14300--14367	20	3.5	20	79	2	75	38	22	23	16	1.93
14356--14413	14	3.9	14	79	16	71	48	24	17	10	1.78
14340--14411	32	2.2	33	95	2	128	47	20	18	13	1.82
14425--14521	19	5.6	19	71	22	97	12	19	21	46	1.83
14447--14505	14	3.9	14	76	20	64	10	16	23	49	1.77
14430--14521	33	2.8	33	98	0	175	11	18	21	47	1.80
14508--14560	20	2.7	20	90	0	79	15	20	24	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15036--15080	18	2.5	18	85	0	63	15	15	42	26	1.87
16400--16442	20	2.2	20	86	0	59	51	20	16	11	1.75
16721--16764	22	2.0	22	86	0	61	20	13	43	22	1.87
16952--17085	20	6.7	20	83	5	135	24	18	25	31	1.98
16932--17086	20	7.7	20	81	6	134	24	18	24	32	1.97
16974--17107	61	2.2	61	81	6	164	20	20	24	34	1.97
17157--17197	21	2.0	21	85	0	55	34	29	17	19	1.94
19603--19729	59	2.2	57	84	11	159	48	7	2	41	1.45
19816--20072	14	19.6	14	74	14	113	43	8	2	45	1.48
19801--20000	26	8.0	26	83	6	243	43	7	2	47	1.44
19889--19982	3	32.3	3	72	6	50	41	4	3	51	1.37
20017--20082	21	3.2	20	74	8	60	50	6	4	39	1.48
20179--20396	14	16.1	14	69	18	113	46	8	1	43	1.45
20174--20298	26	4.8	26	83	4	135	47	6	2	44	1.42
20290--20340	16	2.8	19	72	25	56	52	11	0	35	1.38
20357--20412	22	2.7	20	72	20	60	48	8	0	42	1.34
20399--20671	18	16.6	17	64	15	56	45	11	0	43	1.40
20368--20738	49	7.6	49	90	5	569	45	11	0	43	1.41
20413--20445	13	2.4	14	90	5	50	39	18	0	42	1.50
24042--24102	17	3.4	17	70	16	50	49	11	0	39	1.39
24607--24660	28	1.9	28	100	0	108	57	14	0	27	1.38
24602--24667	28	2.4	28	87	10	107	56	12	0	31	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24637--24685	21	2.3	21	85	3	71	53	16	0	30	1.43
25152--25225	29	2.6	29	95	0	130	13	31	35	20	1.91
30141--30199	7	8.4	7	100	0	118	42	42	0	15	1.46
30203--30413	113	1.9	113	89	2	334	28	18	13	39	1.89
30389--30477	17	5.1	17	68	24	60	20	20	10	49	1.77
30389--30480	36	2.6	36	91	5	152	19	20	9	50	1.76
30274--30591	143	2.1	149	87	6	461	26	19	12	41	1.87
30421--30625	113	1.8	109	88	6	313	26	19	14	40	1.89
31416--31617	93	2.2	93	93	3	345	34	21	15	28	1.94
31554--31676	59	2.1	59	98	0	237	41	26	13	19	1.87
31461--31764	152	2.0	152	98	0	590	37	23	15	24	1.93
32759--32857	1	99.0	1	75	0	90	1	11	0	87	0.58
32768--32860	21	4.5	20	84	6	114	1	11	0	87	0.61
32759--32857	31	3.2	29	83	9	117	1	11	0	87	0.58
32759--32860	41	2.5	42	87	4	136	0	11	0	87	0.60
32759--32860	32	3.3	31	87	8	145	0	11	0	87	0.60
38086--38111	13	2.0	13	100	0	52	15	15	23	46	1.83
40198--40231	17	2.0	17	100	0	68	41	11	11	35	1.78
45729--45794	3	22.7	3	90	6	109	65	0	1	33	1.02
51849--52328	182	2.6	181	88	2	719	44	13	16	26	1.84
54388--54429	21	2.0	21	86	9	59	26	21	28	23	1.99
56630--56681	24	2.2	24	80	16	65	48	0	5	46	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57412--57452	21	1.9	22	85	5	57	56	7	14	21	1.63
61409--61759	127	2.8	126	80	5	361	42	11	13	32	1.81
61598--62753	199	5.8	198	86	4	1523	40	13	14	31	1.85
61598--62739	395	2.9	394	87	4	1615	40	13	14	31	1.85
62720--62759	21	1.9	21	89	0	62	32	10	5	52	1.56
63047--63105	18	3.5	16	76	17	57	22	37	5	35	1.76
63080--63114	18	1.9	18	88	0	52	25	34	5	34	1.80
65667--65711	24	1.9	23	90	4	72	31	2	15	51	1.56
65671--65723	24	2.2	24	82	0	61	33	3	15	47	1.63

Tables:   1

The End!