genome.fa.s4867.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004867.1 Hibiscus syriacus cultivar Beakdansim tig00010975_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46642

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1852--1931	30	2.6	30	79	15	83	41	3	10	45	1.56
2186--2211	7	3.7	7	100	0	52	57	15	11	15	1.65
7464--7505	17	2.4	18	76	15	52	45	0	16	38	1.48
7797--7854	23	2.5	23	85	0	89	18	25	24	31	1.98
10007--10067	26	2.3	26	97	0	113	52	0	18	29	1.45
12977--13060	23	3.7	23	84	6	116	19	25	26	29	1.98
13235--13277	21	2.0	21	83	16	54	39	4	16	39	1.69
13961--14086	59	2.1	59	100	0	252	31	12	24	30	1.92
15530--15581	23	2.3	21	81	18	61	36	3	11	48	1.58
16001--16047	20	2.4	21	82	10	55	36	2	0	61	1.08
16089--16113	2	12.5	2	100	0	50	52	0	0	48	1.00
17791--17816	2	13.0	2	100	0	52	50	0	0	50	1.00
19005--19043	4	10.0	4	94	5	71	25	0	0	74	0.82
19005--19049	23	2.0	23	91	4	74	24	2	0	73	0.95
21325--21361	4	9.8	4	82	11	51	21	0	0	78	0.75
23644--23680	4	8.8	4	91	8	56	24	0	0	75	0.80
33046--33136	46	1.9	48	86	4	132	42	15	26	15	1.86
33139--33177	18	2.1	19	90	4	62	79	0	17	2	0.84
33133--33177	18	2.6	16	80	16	54	80	0	17	2	0.82
33766--34444	105	6.5	105	97	0	1277	34	25	17	23	1.96
34721--34800	2	41.0	2	92	5	137	48	1	0	50	1.08
37990--38023	15	2.2	16	89	5	52	17	0	2	79	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38074--38367	38	7.9	37	83	9	282	45	3	5	45	1.45
38045--38367	36	8.7	36	82	6	299	45	3	5	45	1.45
38045--38367	74	4.4	72	81	7	326	45	3	5	45	1.45
38371--38440	4	17.2	4	76	15	56	22	4	0	72	1.01
38371--38440	13	5.4	13	71	17	56	22	4	0	72	1.01
39194--39264	33	2.2	33	89	0	106	15	23	43	16	1.87
42247--42323	20	3.8	21	70	10	61	35	20	18	25	1.95
42530--42562	12	2.5	14	80	19	52	42	0	0	57	0.98
42535--42563	12	2.4	12	100	0	58	44	0	0	55	0.99
44002--44088	42	2.1	42	88	0	129	35	17	17	29	1.93
45722--45769	14	3.4	14	85	5	60	22	18	35	22	1.96
45971--46003	14	2.3	15	89	5	50	24	3	15	57	1.52
46344--46633	58	5.0	58	85	6	342	36	6	12	44	1.69

Tables:   1

The End!