genome.fa.s4868.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004868.1 Hibiscus syriacus cultivar Beakdansim tig00010976_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66756

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
782--839	20	2.7	21	84	10	64	32	24	20	22	1.98
1635--1714	20	3.9	21	91	4	137	13	21	28	36	1.92
1635--1714	41	2.0	41	94	0	142	13	21	28	36	1.92
3998--4064	33	2.0	33	100	0	134	43	14	8	32	1.77
7774--7822	23	2.1	24	88	3	73	61	8	2	28	1.36
7781--7846	24	2.8	23	81	4	60	65	9	0	25	1.22
9744--9803	2	30.0	2	96	0	111	51	0	0	48	1.00
10313--10355	18	2.5	17	85	7	61	67	2	4	25	1.22
10711--10815	37	2.8	37	83	0	129	29	15	14	40	1.86
11358--11988	105	6.0	105	90	3	882	22	17	25	33	1.96
12188--12263	36	2.1	36	90	0	116	40	15	21	22	1.90
12173--12533	101	3.7	101	86	9	468	37	12	21	29	1.90
12613--12795	36	5.1	36	72	9	133	44	8	16	30	1.78
12564--12795	72	3.2	72	87	7	301	42	10	18	29	1.83
13919--14272	183	1.9	183	93	1	602	31	20	19	27	1.97
18861--18903	18	2.5	17	85	7	61	67	2	4	25	1.22
19260--19364	37	2.8	37	83	0	129	29	13	14	42	1.83
19390--19441	20	2.6	20	90	0	77	32	19	15	32	1.93
19577--19607	15	2.1	15	100	0	62	29	32	12	25	1.93
24082--24311	116	2.0	116	92	0	379	36	16	14	33	1.89
25462--25511	19	2.9	16	78	16	55	24	16	20	40	1.91
25661--25705	23	2.0	23	86	0	63	22	20	24	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25685--25766	23	3.6	23	76	1	76	15	23	23	37	1.93
25920--25983	32	2.0	32	84	0	83	23	6	20	50	1.71
32532--32904	43	8.7	43	85	0	424	22	22	19	35	1.96
32532--32904	129	2.9	128	85	3	473	22	22	19	35	1.96
32654--32942	43	6.6	44	80	8	177	23	20	18	37	1.94
36766--36804	16	2.5	16	88	12	55	30	15	20	33	1.94
36983--37040	25	2.4	25	85	2	73	20	20	22	36	1.95
39017--39058	18	2.3	18	84	8	50	28	21	11	38	1.89
39902--39953	27	1.9	27	100	0	104	23	23	15	38	1.92
40138--40188	18	2.8	18	90	0	84	5	7	41	45	1.57
40155--40223	12	5.8	12	80	0	57	8	11	40	39	1.72
40142--40241	18	5.6	17	78	4	65	9	10	40	41	1.70
40624--40818	93	2.1	93	86	3	268	28	5	30	34	1.80
40819--40859	20	1.9	21	85	14	57	41	7	26	24	1.81
41015--41151	61	2.2	61	90	0	211	35	8	5	49	1.58
41230--41370	18	8.3	18	66	19	79	44	4	4	46	1.44
41264--41372	2	54.0	2	68	24	61	45	4	3	45	1.41
41236--41319	16	5.5	13	72	25	51	45	1	5	47	1.35
41412--41442	9	3.4	9	90	0	53	35	3	9	51	1.51
41552--41586	18	1.9	18	94	0	61	48	5	2	42	1.41
41541--41590	22	2.3	22	89	6	75	46	4	4	46	1.40
43855--43896	22	2.0	22	86	9	61	42	0	7	50	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43978--44012	16	2.2	16	90	5	54	60	2	5	31	1.35
46023--46072	20	2.5	20	76	0	55	42	24	16	18	1.89
49617--49652	14	2.6	14	90	0	63	30	36	0	33	1.58
51278--51322	20	2.2	20	88	0	63	33	20	15	31	1.93
51356--51404	21	2.4	21	86	10	66	26	10	16	46	1.78
51464--51501	20	1.9	20	100	0	76	26	36	5	31	1.79
55222--55251	11	2.9	10	90	9	51	26	3	0	70	1.03
56463--56654	77	2.5	78	87	1	242	38	11	21	28	1.88
56656--56804	60	2.5	60	89	0	253	36	10	20	32	1.87
59156--59213	2	30.0	2	93	6	102	50	0	0	50	1.00
59955--60005	12	4.3	12	76	18	54	31	0	1	66	1.03
59990--60102	14	8.8	14	64	21	68	44	0	0	53	1.12
59971--60115	64	2.3	64	93	2	249	42	0	2	54	1.17
60117--60166	19	2.9	17	81	18	59	42	2	0	56	1.11
60640--60699	31	1.9	31	89	0	93	45	10	5	40	1.60
62371--62518	60	2.5	60	88	0	233	37	10	20	32	1.86
63794--63868	21	3.6	21	92	3	116	20	26	17	36	1.94
63856--63962	20	5.3	20	78	6	92	30	25	15	28	1.96
63857--63989	40	3.3	40	76	9	144	33	23	16	27	1.96
63906--63969	20	3.2	20	91	4	94	29	23	15	31	1.95
64155--64197	22	2.0	22	86	4	61	18	44	16	20	1.87
64403--64447	19	2.4	19	85	3	56	13	17	28	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64411--64455	19	2.4	19	88	0	63	13	17	22	46	1.83
64589--64643	25	2.2	24	78	15	58	20	9	18	52	1.71
65755--65803	18	2.7	18	90	6	73	28	44	10	16	1.80
66215--66259	17	2.6	17	86	6	56	4	2	22	71	1.15
66320--66375	20	2.8	20	81	2	69	39	21	23	16	1.92
66364--66416	14	3.4	14	72	22	52	50	22	15	11	1.75
66348--66437	33	2.8	33	94	3	157	48	21	17	12	1.79
66348--66461	19	6.6	19	72	22	117	47	20	19	13	1.82
66488--66545	19	3.3	19	77	22	81	13	20	18	46	1.83
66467--66545	33	2.4	32	91	2	122	11	18	21	48	1.80
66530--66582	19	2.8	19	85	0	61	16	26	18	37	1.93
66558--66607	19	2.6	19	84	9	57	22	14	26	38	1.91

Tables:   1

The End!