genome.fa.s4870.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004870.1 Hibiscus syriacus cultivar Beakdansim tig00010979_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97024

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
806--846	12	3.5	12	78	15	50	68	2	29	0	1.03
2584--2643	29	2.0	31	90	6	97	35	6	16	41	1.75
2865--2905	21	2.0	21	90	4	66	24	21	26	26	2.00
2934--2973	20	1.9	21	85	10	55	37	37	10	15	1.80
3189--3258	34	2.1	32	89	5	104	31	15	31	21	1.95
3731--3809	22	3.6	22	100	0	158	35	10	26	27	1.89
4459--4545	23	3.8	23	77	10	81	24	17	27	31	1.97
16828--16877	23	2.2	23	96	0	91	28	18	12	42	1.85
16868--17049	101	1.8	101	81	4	233	40	18	4	36	1.72
16952--17074	65	1.9	65	87	0	183	39	21	3	34	1.70
17047--17133	32	2.7	32	81	0	111	34	18	9	37	1.83
17166--17202	17	2.2	17	95	0	65	35	10	0	54	1.36
19505--20317	212	3.8	210	89	4	1120	51	7	11	29	1.66
19505--20317	422	1.9	422	85	6	1133	51	7	11	29	1.66
20352--20406	22	2.5	22	85	8	67	47	3	3	45	1.38
20401--20461	27	2.2	28	85	2	79	49	4	4	40	1.46
20403--20455	18	2.8	19	83	8	56	49	5	5	39	1.50
20535--20628	17	5.3	17	72	15	66	43	0	5	51	1.24
20571--20631	22	3.0	22	88	9	85	40	0	8	50	1.32
20680--20740	20	3.4	20	68	29	64	40	6	1	50	1.38
20653--20760	35	3.1	35	82	7	132	39	6	3	50	1.46
20682--20760	33	2.3	33	91	4	122	40	6	3	49	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20682--20779	33	2.9	34	86	8	105	41	7	4	46	1.50
20832--20902	2	34.0	2	73	18	56	45	4	2	47	1.36
20832--20902	20	3.5	20	84	5	90	45	4	2	47	1.36
20770--20907	51	2.8	51	79	10	144	43	6	5	44	1.52
20708--20879	62	2.7	61	71	18	172	41	7	5	44	1.57
20856--20925	34	2.0	34	86	5	95	48	5	2	42	1.41
20926--20956	14	2.2	14	94	0	53	48	29	0	22	1.51
20953--21105	33	4.5	33	80	8	173	44	7	5	42	1.56
20977--21116	18	8.1	18	72	15	134	45	7	5	41	1.55
21171--21306	62	2.2	61	86	3	184	50	3	11	33	1.56
23839--23885	14	3.7	14	71	26	50	51	4	0	44	1.21
23837--23886	23	2.1	24	96	3	93	48	4	0	48	1.20
24155--24238	16	5.2	16	98	0	159	39	13	29	17	1.88
25980--26053	2	37.0	2	97	0	139	51	0	0	48	1.00
36433--36476	22	2.0	22	95	0	79	20	22	11	45	1.83
38010--38092	29	2.8	29	90	1	130	42	9	15	32	1.80
42774--42856	29	2.8	29	92	1	139	43	9	14	32	1.78
44087--44161	3	25.0	3	100	0	150	33	0	0	66	0.92
50062--50114	23	2.3	23	100	0	106	32	28	18	20	1.97
53054--53099	24	1.9	24	86	8	67	36	23	19	19	1.95
53063--53132	24	3.0	24	79	12	74	38	24	20	17	1.93
53104--53192	23	3.9	23	80	0	106	33	24	22	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56301--56335	16	2.2	16	94	0	61	45	14	20	20	1.85
58575--58602	2	14.0	2	100	0	56	50	0	0	50	1.00
88648--88683	11	3.4	11	96	3	65	8	25	8	58	1.55
91662--91713	20	2.6	20	96	0	95	17	28	23	30	1.97

Tables:   1

The End!