genome.fa.s4871.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004871.1 Hibiscus syriacus cultivar Beakdansim tig00010980_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79231

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1086--1135	20	2.5	20	83	3	66	38	20	26	16	1.92
1124--1256	20	6.7	20	80	8	119	30	25	18	24	1.98
1124--1276	20	7.7	20	78	9	116	32	24	18	24	1.97
1435--1479	22	2.0	22	86	0	63	22	44	13	20	1.85
1752--1792	20	2.0	20	85	0	55	12	14	21	51	1.75
3096--3139	17	2.5	18	85	3	63	27	43	15	13	1.85
3515--3556	17	2.5	17	84	7	50	4	2	21	71	1.16
3663--3719	14	3.9	14	79	20	71	47	24	17	10	1.79
3647--3736	31	2.8	33	91	6	157	46	22	18	12	1.82
3753--3810	14	3.9	14	79	16	71	10	17	24	48	1.78
3755--3826	32	2.2	33	97	2	137	12	18	22	47	1.81
3811--3866	20	2.8	19	86	7	76	16	25	23	35	1.94
5691--5725	14	2.6	14	90	4	54	31	0	22	45	1.53
5929--5966	20	1.9	20	94	0	67	15	21	23	39	1.92
6299--6371	20	3.7	20	88	0	110	26	19	27	27	1.99
6484--6524	21	2.0	21	85	0	55	34	29	17	19	1.94
6698--6763	15	4.3	16	79	9	84	40	13	0	45	1.44
6708--6803	30	3.2	30	86	7	126	44	11	1	42	1.47
6872--6977	41	2.6	43	81	11	107	43	12	1	42	1.53
7112--7169	29	2.1	27	81	12	64	43	10	0	46	1.38
7128--7218	46	2.0	46	85	6	123	51	10	0	37	1.37
7375--7459	39	2.2	38	91	4	143	44	15	2	37	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7476--7513	9	4.2	9	83	10	51	65	0	2	31	1.06
7807--7863	29	2.0	29	89	0	87	19	29	28	22	1.98
7943--7998	29	2.0	28	96	3	103	16	42	26	14	1.86
8942--8998	19	3.0	19	94	0	96	33	5	26	35	1.79
15267--15311	21	2.1	21	87	0	63	31	28	24	15	1.96
16168--16277	31	3.5	31	96	0	193	19	19	21	40	1.92
21419--21578	41	3.9	41	91	3	277	18	20	25	36	1.95
21567--21934	41	9.0	41	90	3	555	16	21	24	37	1.93
21419--21763	185	1.9	185	99	0	681	18	20	24	36	1.95
21423--21804	185	2.1	184	93	3	651	18	20	25	36	1.95
22032--22070	5	7.6	5	94	5	69	23	56	20	0	1.42
22558--22594	6	6.2	6	100	0	74	0	16	48	35	1.46
22654--22718	21	3.1	21	68	4	60	40	27	18	13	1.89
23766--24227	112	4.1	112	93	0	780	46	14	14	25	1.82
24098--24553	182	2.5	182	92	2	747	43	12	16	27	1.84
24799--24846	23	2.1	23	92	0	78	37	18	8	35	1.81
25294--25337	18	2.5	17	82	7	52	61	0	0	38	0.96
25291--25340	25	2.0	25	84	7	66	62	0	0	38	0.96
25312--25396	44	2.0	41	88	6	125	51	2	0	45	1.13
25350--25400	21	2.7	18	70	18	50	49	0	0	50	1.00
31663--31706	23	1.9	23	95	0	79	20	52	18	9	1.72
34165--34280	24	4.8	24	86	6	155	25	15	19	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36212--36286	23	3.5	22	85	10	102	33	5	22	38	1.77
36217--36286	20	3.3	20	88	8	86	32	5	22	38	1.78
36695--36764	20	3.3	20	77	13	77	34	5	21	38	1.77
36690--36764	23	3.5	22	78	12	84	34	5	21	38	1.76
35799--37161	477	2.8	477	93	2	2303	40	7	10	40	1.69
37871--37914	11	3.8	11	85	11	61	59	0	2	38	1.10
37873--37901	13	2.2	13	100	0	58	65	0	0	34	0.93
40256--40332	29	2.5	31	82	12	81	18	11	10	59	1.59
43245--43335	6	13.6	7	76	14	70	16	19	12	51	1.75
43245--43329	27	3.1	27	94	0	152	16	20	12	50	1.77
45757--45801	16	2.9	15	87	9	63	82	8	8	0	0.85
45757--45800	17	2.8	16	89	6	63	84	9	6	0	0.79
47502--47574	24	3.2	23	77	14	80	41	10	4	43	1.59
47691--47807	32	3.6	32	92	1	198	29	15	23	31	1.95
47685--47825	65	2.2	63	83	5	192	32	14	22	30	1.93
47933--48037	34	3.1	34	90	1	165	33	19	8	39	1.82
47937--48058	34	3.6	34	87	1	163	31	20	10	36	1.87
48223--48368	78	1.9	77	82	2	186	32	15	13	38	1.86
48381--48472	36	2.6	35	96	3	166	26	22	14	36	1.92
48408--48493	21	4.4	21	75	19	96	25	24	12	37	1.91
48408--48529	57	2.1	56	93	3	208	24	23	13	38	1.90
48383--48570	93	2.0	93	92	2	315	25	22	14	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48468--48623	36	4.2	36	84	4	195	27	20	15	36	1.93
48478--48671	39	5.1	39	84	3	175	26	19	16	37	1.93
48693--49033	43	7.6	43	79	13	348	28	14	28	29	1.95
48850--49081	101	2.3	98	85	7	308	28	15	27	28	1.96
49083--49401	90	3.5	91	89	3	502	24	18	21	35	1.96
50904--50943	18	2.2	18	86	8	55	50	2	5	42	1.37
51336--51366	14	2.2	14	94	0	53	87	0	3	9	0.66
51336--51371	19	1.9	18	88	5	54	83	0	2	13	0.76
52638--52689	20	2.6	20	78	0	59	73	1	3	21	1.10
52718--53091	110	3.5	103	78	13	350	44	7	3	44	1.48
52842--53049	63	3.1	63	76	15	204	45	5	3	45	1.42
52924--53135	37	5.7	38	80	7	197	45	6	2	45	1.44
52905--53134	112	2.1	111	85	4	304	44	6	3	45	1.45
53118--53160	2	22.0	2	95	4	79	51	0	0	48	1.00
53704--54874	84	13.9	84	87	0	1610	24	18	22	34	1.96
58416--58475	15	3.8	15	91	4	75	76	1	10	11	1.09
58423--58477	17	3.4	16	85	9	76	80	1	9	9	0.99
61049--61086	20	1.9	20	88	0	58	21	21	10	47	1.80
63628--63682	15	3.5	15	90	5	74	76	1	9	12	1.10
63635--63689	17	3.3	16	82	12	67	78	1	10	9	1.05
67196--67284	30	3.0	30	91	0	133	2	37	0	60	1.09
73316--73375	3	18.3	3	81	10	57	60	1	36	1	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73316--73373	22	2.5	24	88	8	84	58	1	37	1	1.18
75072--75116	23	2.0	23	82	8	56	37	4	0	57	1.19

Tables:   1

The End!