genome.fa.s4872.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004872.1 Hibiscus syriacus cultivar Beakdansim tig00010981_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97870

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4167--4204	20	1.9	20	94	0	67	26	23	21	28	1.99
4213--4364	63	2.4	62	81	7	182	31	21	16	30	1.95
5066--5123	30	1.9	31	86	10	84	24	22	18	34	1.96
5676--7642	987	2.0	980	99	0	3862	28	15	19	36	1.92
13423--13452	13	2.2	14	94	5	53	23	30	30	16	1.96
13449--13494	5	8.8	5	86	9	65	4	21	54	19	1.61
13423--13452	7	4.4	7	91	8	53	23	30	30	16	1.96
17440--17491	14	3.7	14	87	7	70	23	9	26	40	1.85
22361--22414	21	2.5	21	96	3	99	5	0	40	53	1.24
26439--26506	25	2.9	23	77	10	66	50	0	5	44	1.26
26743--26806	28	2.2	29	86	10	96	45	9	3	42	1.52
26906--27019	60	1.9	60	83	0	147	37	14	9	38	1.78
31344--31386	19	2.4	18	85	11	61	62	9	6	20	1.48
31346--31387	18	2.3	19	87	4	59	64	9	7	19	1.46
32330--32383	20	2.7	19	75	8	63	33	31	18	16	1.93
32368--32465	21	4.7	21	71	15	78	36	21	21	20	1.95
32433--32708	20	13.6	20	69	11	116	39	24	17	18	1.92
32494--32705	41	5.2	41	88	2	302	39	25	16	19	1.92
33265--33343	20	3.9	21	86	5	94	51	17	18	11	1.75
33265--33386	20	6.5	19	74	13	83	49	20	18	11	1.78
33404--33478	33	2.3	33	92	0	123	12	20	22	45	1.83
33417--33498	33	2.5	33	87	2	110	13	21	21	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33471--33518	20	2.4	20	89	6	71	18	20	22	37	1.94
33382--33527	19	8.1	19	74	17	114	14	21	19	44	1.86
35134--35200	21	3.2	21	66	6	55	23	35	20	19	1.95
36552--36587	14	2.6	14	95	0	63	33	0	22	44	1.53
36694--36792	19	5.7	18	71	24	63	48	22	18	11	1.79
36694--36787	33	2.8	33	88	3	127	47	22	18	11	1.80
36726--36802	19	4.3	19	79	18	85	46	24	15	12	1.81
36798--36946	19	8.3	19	71	16	120	12	24	18	44	1.85
36802--36895	33	2.8	33	96	0	170	11	24	19	44	1.84
36870--36949	20	4.1	20	82	3	92	16	21	17	45	1.86
40357--40423	20	3.3	20	93	0	116	22	19	28	29	1.98
40410--40502	20	4.7	20	90	0	150	17	18	23	40	1.90
40357--40483	40	3.2	40	82	8	118	20	18	25	35	1.95
40739--41044	81	3.8	81	83	5	377	36	11	25	26	1.90
41102--41219	49	2.5	45	82	6	128	44	6	22	26	1.78
41111--41219	46	2.3	49	82	4	134	44	6	22	25	1.76
43557--43622	27	2.4	28	82	10	82	16	15	19	48	1.81
58311--58343	6	5.5	6	100	0	66	33	51	15	0	1.43
59004--59036	6	5.5	6	96	0	57	0	12	51	36	1.39
59237--59297	28	2.2	28	96	0	113	36	13	18	32	1.89
61683--61737	25	2.2	25	87	6	76	23	21	14	40	1.90
61692--61738	25	2.0	24	91	8	78	23	19	17	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61887--62134	12	20.7	12	77	0	55	36	26	10	25	1.89
61876--62265	8	48.8	8	86	0	474	38	27	10	23	1.87
68913--69019	48	2.3	47	82	11	121	33	15	18	31	1.93
69047--69570	48	10.9	48	84	3	581	33	15	21	28	1.95
69047--69572	96	5.5	96	86	3	641	33	15	21	28	1.95
69047--69565	144	3.6	144	86	2	668	33	15	21	29	1.95
73865--73975	2	55.5	2	98	0	213	49	0	0	49	1.07
80464--80570	55	1.9	55	94	0	187	25	19	10	44	1.82
81864--81902	18	2.2	18	86	9	53	53	0	2	43	1.14
84678--84719	3	14.0	3	84	0	57	59	0	0	40	0.97
84678--84719	12	3.5	12	90	0	66	59	0	0	40	0.97
88513--88553	22	1.9	21	85	5	55	12	9	0	78	0.98
92733--92811	27	3.0	25	71	23	65	29	1	3	65	1.17
92755--92810	27	2.0	28	82	3	69	28	1	3	66	1.19
96411--96458	19	2.5	19	93	0	78	25	14	25	35	1.94

Tables:   1

The End!