Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004873.1 Hibiscus syriacus cultivar Beakdansim tig00010984_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63049

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
180--234
20
2.8
20
94
2
94
34
18
18
29
1.94
3013--3049
17
2.1
18
95
5
67
48
5
24
21
1.71
3915--3957
13
3.2
13
77
6
50
30
16
18
34
1.93
22193--22256
20
3.2
20
86
0
92
31
17
15
35
1.91
22193--22270
40
2.0
39
89
2
120
33
17
12
35
1.88
24801--24825
11
2.3
11
100
0
50
84
0
0
16
0.63
25557--25589
16
2.1
16
94
0
57
54
24
15
6
1.63
25623--25700
10
7.6
10
77
9
77
64
20
5
10
1.44
25957--25984
14
2.0
14
100
0
56
64
14
7
14
1.48
30107--30145
20
2.0
20
90
5
62
38
2
0
58
1.12
39974--40050
30
2.5
30
87
2
100
32
14
28
24
1.94
41575--41625
19
2.6
20
90
3
77
43
23
17
15
1.88
41612--41665
20
2.7
20
94
0
90
51
18
18
11
1.74
41700--41827
20
6.4
20
98
0
238
35
15
25
23
1.94
41798--41877
35
2.3
35
88
0
115
38
17
28
15
1.90
41971--42000
6
5.0
6
95
0
51
20
63
16
0
1.31
42683--42841
6
26.5
6
100
0
318
0
16
50
33
1.45
42919--42962
20
2.2
20
91
0
70
11
18
15
54
1.70
42949--43225
20
13.6
20
79
7
182
18
22
18
40
1.91
42951--43144
40
4.7
40
82
5
244
20
24
17
37
1.93
42959--43142
83
2.2
83
93
0
305
20
25
17
36
1.94
43175--43225
19
2.6
20
90
3
77
15
17
23
43
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45891--45938
20
2.4
20
86
6
62
4
29
22
43
1.72
62261--62315
27
2.0
27
100
0
110
27
7
36
29
1.84

Tables:   1

The End!