Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004874.1 Hibiscus syriacus cultivar Beakdansim tig00010986_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101531
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Found at i:2356 original size:17 final size:16
Alignment explanation
Indices: 2334--2367 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
2324 AATATGAAAG
2334 TAATAATATAATCAAAA
1 TAATAATA-AATCAAAA
*
2351 TAATAATAAATGAAAA
1 TAATAATAAATCAAAA
2367 T
1 T
2368 GATGAGAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (16 bp):
TAATAATAAATCAAAA
Found at i:4732 original size:19 final size:19
Alignment explanation
Indices: 4708--4745 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
4698 CTGATTGTTG
4708 CATATGATGTTATCATGAA
1 CATATGATGTTATCATGAA
* *
4727 CATATGATTTTATCGTGAA
1 CATATGATGTTATCATGAA
4746 TGATATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (19 bp):
CATATGATGTTATCATGAA
Found at i:5028 original size:61 final size:61
Alignment explanation
Indices: 4941--5055 Score: 142
Period size: 61 Copynumber: 1.9 Consensus size: 61
4931 AAAGGTGGAT
* * *
4941 ACGACCTTATGTATCATGTTCGGATTAACACTATAGCATAAGCTTAGTGCAGGTGGTAGGC
1 ACGACCTTATGTATCATGTCCAGATTAACACTATAGCATAACCTTAGTGCAGGTGGTAGGC
* * * * *
5002 ACGACCTTATGTGT-ATTGTCCAGATTAGCACTATGGCGTAACCTTAGTGTAGGT
1 ACGACCTTATGTATCA-TGTCCAGATTAACACTATAGCATAACCTTAGTGCAGGT
5056 TTAGCACTAC
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
60 1 0.02
61 44 0.98
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.31
Consensus pattern (61 bp):
ACGACCTTATGTATCATGTCCAGATTAACACTATAGCATAACCTTAGTGCAGGTGGTAGGC
Found at i:5201 original size:43 final size:42
Alignment explanation
Indices: 5153--5252 Score: 121
Period size: 43 Copynumber: 2.3 Consensus size: 42
5143 TGGTATATGG
* *
5153 TTATGGAAAAATGGTAAGTATATTGAT-AAATAAGCTTATGAGC
1 TTATGGATAAATGGTAAGTAT-TTGATAAAAT-AGCTTACGAGC
* * *
5196 TTATGGATTAATGGTATGTATTTGGTAAAATAGCTTACGAGC
1 TTATGGATAAATGGTAAGTATTTGATAAAATAGCTTACGAGC
5238 TTATGGGATAAATGG
1 TTAT-GGATAAATGG
5253 AAAATAATAA
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
42 18 0.37
43 31 0.63
ACGTcount: A:0.36, C:0.05, G:0.24, T:0.35
Consensus pattern (42 bp):
TTATGGATAAATGGTAAGTATTTGATAAAATAGCTTACGAGC
Found at i:8107 original size:16 final size:16
Alignment explanation
Indices: 8086--8116 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8076 AAATATTATT
*
8086 AAAAAAACAGAAAAAG
1 AAAAAAAAAGAAAAAG
8102 AAAAAAAAAGAAAAA
1 AAAAAAAAAGAAAAA
8117 AACAGAGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.87, C:0.03, G:0.10, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAGAAAAAG
Found at i:8120 original size:26 final size:28
Alignment explanation
Indices: 8086--8140 Score: 87
Period size: 26 Copynumber: 2.0 Consensus size: 28
8076 AAATATTATT
8086 AAAAAAACAGAAAAAGAA-AA-AAAAAG
1 AAAAAAACAGAAAAAGAACAATAAAAAG
*
8112 AAAAAAACAGAGAAAGAACAATAAAAAG
1 AAAAAAACAGAAAAAGAACAATAAAAAG
8140 A
1 A
8141 TGAAGTATAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 17 0.65
27 2 0.08
28 7 0.27
ACGTcount: A:0.80, C:0.05, G:0.13, T:0.02
Consensus pattern (28 bp):
AAAAAAACAGAAAAAGAACAATAAAAAG
Found at i:15954 original size:16 final size:16
Alignment explanation
Indices: 15933--15963 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15923 TAATTAAACA
15933 AACATAAACGAACATG
1 AACATAAACGAACATG
*
15949 AACATAAACGGACAT
1 AACATAAACGAACAT
15964 AAACGTTAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.19, G:0.13, T:0.13
Consensus pattern (16 bp):
AACATAAACGAACATG
Found at i:19782 original size:14 final size:14
Alignment explanation
Indices: 19763--19789 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
19753 GTTTAACATG
19763 CTGGACCGGTCTGA
1 CTGGACCGGTCTGA
19777 CTGGACCGGTCTG
1 CTGGACCGGTCTG
19790 GACCGAGCCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.11, C:0.30, G:0.37, T:0.22
Consensus pattern (14 bp):
CTGGACCGGTCTGA
Found at i:22271 original size:125 final size:126
Alignment explanation
Indices: 22044--22285 Score: 382
Period size: 125 Copynumber: 1.9 Consensus size: 126
22034 TGTGCGTTTA
* *
22044 GAGGGATTACTATGGTTTTTAAAATATTTTATTTGAGGGGCATTGTTGGAGGAAGCATATATGCT
1 GAGGGATTACTATGGTTTTTAAAATATTTTATTTGAGGGGCATTGTTGGAGGAAGAATACATGCT
* * *
22109 AGCTCCTCAGCTTTTTGCTCAGGGCCTTATTGGTTGTGCGGGTTGTATGGTTGTGAAGTTG
66 AGCTCCTCAGCTTTGTGCTCAGGGCCTTACTGGTTGTGCGGGGTGTATGGTTGTGAAGTTG
*
22170 GAGGGATTACTATGGTTTTTAAAATATTTTATTTG-GGGGCGTTGTTGGAGGAAGAATACATGC-
1 GAGGGATTACTATGGTTTTTAAAATATTTTATTTGAGGGGCATTGTTGGAGGAAGAATACATGCT
*
22233 AGGCAT-CTCGGCTTTGTGCTCAGGGCCTTACTGGTTGTGCGGGGTGTATGGTT
66 A-GC-TCCTCAGCTTTGTGCTCAGGGCCTTACTGGTTGTGCGGGGTGTATGGTT
22286 ATGGGGAACC
Statistics
Matches: 107, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
124 1 0.01
125 70 0.65
126 36 0.34
ACGTcount: A:0.19, C:0.12, G:0.32, T:0.37
Consensus pattern (126 bp):
GAGGGATTACTATGGTTTTTAAAATATTTTATTTGAGGGGCATTGTTGGAGGAAGAATACATGCT
AGCTCCTCAGCTTTGTGCTCAGGGCCTTACTGGTTGTGCGGGGTGTATGGTTGTGAAGTTG
Found at i:29383 original size:23 final size:22
Alignment explanation
Indices: 29348--29397 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 22
29338 GGAATCGATA
29348 CCCCCTTGAAGGGGAACCAATT
1 CCCCCTTGAAGGGGAACCAATT
*
29370 CCCCCTTTGCAGGGGAACCAATT
1 CCCCC-TTGAAGGGGAACCAATT
29393 CCCCC
1 CCCCC
29398 CTAGGGGAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 5 0.19
23 21 0.81
ACGTcount: A:0.22, C:0.40, G:0.20, T:0.18
Consensus pattern (22 bp):
CCCCCTTGAAGGGGAACCAATT
Found at i:36070 original size:149 final size:149
Alignment explanation
Indices: 35844--36135 Score: 444
Period size: 149 Copynumber: 2.0 Consensus size: 149
35834 ACAGAAACTG
* * * *
35844 TTTTATTTGGGGGTAATTTTGAAGGAAGTATATCTGCAGGCTCCTCAGCTTTGTGCTCAGGGGCT
1 TTTTATTTGGGGGTAATTTTGAAGGAAGCATAACTGCAGGCTCCTCAACTTTGTGCTCAGGGCCT
* * *
35909 TACTTGTTGTGCGGGGTGTATGGTTATGGGGAACCTACACATTATGGTTGTGCGATTGGAGGGAT
66 TACTGGTTGTGCGAGGTGTATGGTTATGGGGAACCTACACATTATGGTTATGCGATTGGAGGGAT
35974 TACTATGGTTTTTAAAATA
131 TACTATGGTTTTTAAAATA
* *
35993 TTTTATTTGGGGG-CATTGTTGGAGGAAGCA-AACATGCAGGCTCCTCAACTTTGTGCTCAGGGC
1 TTTTATTTGGGGGTAATT-TTGAAGGAAGCATAAC-TGCAGGCTCCTCAACTTTGTGCTCAGGGC
* * *
36056 CTTACTGGTTGTGCGAGGTGTATGGTTATGGGGAACCTACACATTATGGTTATGTGGTTTGAGGG
64 CTTACTGGTTGTGCGAGGTGTATGGTTATGGGGAACCTACACATTATGGTTATGCGATTGGAGGG
36121 ATTACTATGGTTTTT
129 ATTACTATGGTTTTT
36136 GAATTTTAAA
Statistics
Matches: 129, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
148 5 0.04
149 124 0.96
ACGTcount: A:0.20, C:0.13, G:0.30, T:0.36
Consensus pattern (149 bp):
TTTTATTTGGGGGTAATTTTGAAGGAAGCATAACTGCAGGCTCCTCAACTTTGTGCTCAGGGCCT
TACTGGTTGTGCGAGGTGTATGGTTATGGGGAACCTACACATTATGGTTATGCGATTGGAGGGAT
TACTATGGTTTTTAAAATA
Found at i:38242 original size:14 final size:14
Alignment explanation
Indices: 38224--38261 Score: 53
Period size: 12 Copynumber: 2.9 Consensus size: 14
38214 AAATATAATC
38224 ATTTTCATATTTAT
1 ATTTTCATATTTAT
*
38238 GTTTTC-T-TTTAT
1 ATTTTCATATTTAT
38250 ATTTTCATATTT
1 ATTTTCATATTT
38262 CTTTTATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 4
0.77 0.08 0.15
Matches are distributed among these distances:
12 10 0.50
13 2 0.10
14 8 0.40
ACGTcount: A:0.21, C:0.08, G:0.03, T:0.68
Consensus pattern (14 bp):
ATTTTCATATTTAT
Found at i:41565 original size:35 final size:35
Alignment explanation
Indices: 41526--41654 Score: 134
Period size: 35 Copynumber: 3.7 Consensus size: 35
41516 AGGTTCAACT
41526 CGATCAAACTGGTAATTCCTTATATAGGTTTAGAC
1 CGATCAAACTGGTAATTCCTTATATAGGTTTAGAC
* * * * * *
41561 CGATCGAATTGGTAATTCCTTACA-ACAGATTAAAC
1 CGATCAAACTGGTAATTCCTTATATA-GGTTTAGAC
* *
41596 TCGGTCAAATTGGTAATTCCTTATATAGGTTTAGAC
1 -CGATCAAACTGGTAATTCCTTATATAGGTTTAGAC
* * *
41632 TGATCGAGCTGGTAATTCCTTAT
1 CGATCAAACTGGTAATTCCTTAT
41655 GGATCTAAAG
Statistics
Matches: 74, Mismatches: 17, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
34 1 0.01
35 45 0.61
36 27 0.36
37 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (35 bp):
CGATCAAACTGGTAATTCCTTATATAGGTTTAGAC
Found at i:41638 original size:71 final size:71
Alignment explanation
Indices: 41522--41653 Score: 219
Period size: 71 Copynumber: 1.9 Consensus size: 71
41512 CTGCAGGTTC
*
41522 AACTCGATCAAACTGGTAATTCCTTATATAGGTTTAGACCGATCGAATTGGTAATTCCTTACAAC
1 AACTCGATCAAACTGGTAATTCCTTATATAGGTTTAGACCGATCGAACTGGTAATTCCTTACAAC
41587 AGATTA
66 AGATTA
* * * *
41593 AACTCGGTCAAATTGGTAATTCCTTATATAGGTTTAGACTGATCGAGCTGGTAATTCCTTA
1 AACTCGATCAAACTGGTAATTCCTTATATAGGTTTAGACCGATCGAACTGGTAATTCCTTA
41654 TGGATCTAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
71 56 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (71 bp):
AACTCGATCAAACTGGTAATTCCTTATATAGGTTTAGACCGATCGAACTGGTAATTCCTTACAAC
AGATTA
Found at i:48541 original size:16 final size:17
Alignment explanation
Indices: 48502--48541 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
48492 TGAAAAGTAT
48502 TTGAATAATATATGATC
1 TTGAATAATATATGATC
48519 TTG-ATAA-ATCATG-TC
1 TTGAATAATAT-ATGATC
48534 TTGAATAA
1 TTGAATAA
48542 CTGATTAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 7 0.33
16 11 0.52
17 3 0.14
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.40
Consensus pattern (17 bp):
TTGAATAATATATGATC
Found at i:49066 original size:71 final size:71
Alignment explanation
Indices: 48934--49075 Score: 178
Period size: 71 Copynumber: 2.0 Consensus size: 71
48924 TATTTGCTTA
* *
48934 CAGGTTCAGCTCGATCAAACTGGTAATTCATTATATAGGTTCAGACCACTCAAACTAGTAATTCC
1 CAGGTTCAACTCGATCAAACTGGTAATTCATTATACAGGTTCAGACCACTCAAACTAGTAATTCC
48999 TTACAG
66 TTACAG
* * * * * * * *
49005 CAGGTTTAACTCGGTCAAATTGGTAATTCCTTATACAGGTTCAGAACGA-TCGAGCTGGTAATTC
1 CAGGTTCAACTCGATCAAACTGGTAATTCATTATACAGGTTCAG-ACCACTCAAACTAGTAATTC
49069 CTTACAG
65 CTTACAG
49076 ATCTAAGGTG
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
71 57 0.95
72 3 0.05
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (71 bp):
CAGGTTCAACTCGATCAAACTGGTAATTCATTATACAGGTTCAGACCACTCAAACTAGTAATTCC
TTACAG
Found at i:50875 original size:55 final size:55
Alignment explanation
Indices: 50754--50912 Score: 212
Period size: 55 Copynumber: 2.9 Consensus size: 55
50744 TAAGCATGCA
* * *
50754 AAAACTTAAGAAAATCCATACCAAGTGTATGAATCTCGGTATGGGCACTACGTGTGC
1 AAAAC-TAAG-AAATTCATACTAAGTGTATGAATTTCGGTATGGGCACTACGTGTGC
* * * **
50811 -AAACTAAGAAATTCATACTAAGTGTATTAATTTCCGTATGGCCACTTTGTGTGC
1 AAAACTAAGAAATTCATACTAAGTGTATGAATTTCGGTATGGGCACTACGTGTGC
*
50865 AAAACTAAGAAATTCATACTAAGTGTATGGATTTCGGTATGGGCACTA
1 AAAACTAAGAAATTCATACTAAGTGTATGAATTTCGGTATGGGCACTA
50913 GAAATTCATA
Statistics
Matches: 88, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
54 38 0.43
55 46 0.52
56 4 0.05
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (55 bp):
AAAACTAAGAAATTCATACTAAGTGTATGAATTTCGGTATGGGCACTACGTGTGC
Found at i:50917 original size:40 final size:40
Alignment explanation
Indices: 50872--50952 Score: 135
Period size: 40 Copynumber: 2.0 Consensus size: 40
50862 TGCAAAACTA
* **
50872 AGAAATTCATACTAAGTGTATGGATTTCGGTATGGGCACT
1 AGAAATTCATACTAAGTGTATGAATTTCAATATGGGCACT
50912 AGAAATTCATACTAAGTGTATGAATTTCAATATGGGCACT
1 AGAAATTCATACTAAGTGTATGAATTTCAATATGGGCACT
50952 A
1 A
50953 TGTGTGCAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (40 bp):
AGAAATTCATACTAAGTGTATGAATTTCAATATGGGCACT
Found at i:51547 original size:68 final size:68
Alignment explanation
Indices: 51210--51529 Score: 532
Period size: 68 Copynumber: 4.7 Consensus size: 68
51200 GATAAATGGT
* * * *
51210 CTAACTGTGCATTTGATAGAAATGTGTCAATTATGCCAATTAGATGCAAGGCTAAGTGCCTTTGA
1 CTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGA
51275 GGC
66 GGC
* *
51278 CTAAATGTGAATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGA
1 CTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGA
51343 GGC
66 GGC
*
51346 CTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGCGCCTTTGA
1 CTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGA
51411 GGC
66 GGC
* * *
51414 CTAACTGTGCATTTGATAGAAAGGTGTAAATTATGCTAGTTAGATGAAAGGCTAAGTGCCTTTGA
1 CTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGA
51479 GGC
66 GGC
* *
51482 CTAACTGTGCATTTGGCAGAAAGGTGTCAATTATGCTAGTTAGATGAA
1 CTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAA
51530 TGGTTAAAGA
Statistics
Matches: 236, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 236 1.00
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (68 bp):
CTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGA
GGC
Found at i:51616 original size:81 final size:81
Alignment explanation
Indices: 51487--52058 Score: 773
Period size: 81 Copynumber: 7.1 Consensus size: 81
51477 GAGGCCTAAC
* *
51487 TGTGCATTTGGCAGAAAGGTGTCAATTATGCTAGTTAGATGAATGGTTAAAGACTGTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACTGTTGAGTAAA
51552 AGATAAATGGCCTAGT
66 AGATAAATGGCCTAGT
* * * * *
51568 TATGCATTTGGCATAAAGGTGTCCATTATGCCAGTTAGATGAACGGTTAAACACCGTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACTGTTGAGTAAA
51633 AGATAAATGGCCTAGCT
66 AGATAAATGGCCTAG-T
* * ** *
51650 T-TGCATTTGGCAGAAAGATGTCAATTATTCCAGTTAGATGAACGGTTAAAGAAAGATGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACTGTTGAGTAAA
51714 AG----AT--CCTAGT
66 AGATAAATGGCCTAGT
* * * * *
51724 TGTGCATTTGACAGAAATGTGTCAATTATGCCAATTAGATGAATGATTAAAGA-TCGTTGAGTAA
1 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACT-GTTGAGTAA
*
51788 AAGACAAATGGCCTAGT
65 AAGATAAATGGCCTAGT
* * *
51805 TGTGTATTTAGCAGAAATGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACTGTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACTGTTGAGTAAA
51870 AGATAAATGGCCTAGT
66 AGATAAATGGCCTAGT
* * * * * **
51886 TGTGCATTTGGTAGAAATGTGTCAATTATGACAGTTAGATGAATGGTTAAAGTCCATTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACTGTTGAGTAAA
*
51951 AGATAAATGGTCTAGT
66 AGATAAATGGCCTAGT
* *
51967 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATAATGTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACTGTTGAGTAAA
* *
52032 AGATAAATGGCATAAT
66 AGATAAATGGCCTAGT
52048 TGTGCATTTGG
1 TGTGCATTTGG
52059 TAGTTTAGTG
Statistics
Matches: 429, Mismatches: 52, Indels: 20
0.86 0.10 0.04
Matches are distributed among these distances:
74 2 0.00
75 60 0.14
77 2 0.00
79 2 0.00
81 360 0.84
82 3 0.01
ACGTcount: A:0.35, C:0.10, G:0.24, T:0.30
Consensus pattern (81 bp):
TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACTGTTGAGTAAA
AGATAAATGGCCTAGT
Found at i:56535 original size:12 final size:13
Alignment explanation
Indices: 56506--56534 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
56496 TGGAAGTGTT
56506 AAAATGAATTTAA
1 AAAATGAATTTAA
56519 AAAATGAATTTAA
1 AAAATGAATTTAA
56532 AAA
1 AAA
56535 TCAAAATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.28
Consensus pattern (13 bp):
AAAATGAATTTAA
Found at i:57006 original size:12 final size:12
Alignment explanation
Indices: 56989--57013 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
56979 TTATATTATC
56989 ATTATTTAGTTT
1 ATTATTTAGTTT
57001 ATTATTTAGTTT
1 ATTATTTAGTTT
57013 A
1 A
57014 AAAATTAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (12 bp):
ATTATTTAGTTT
Found at i:66912 original size:74 final size:74
Alignment explanation
Indices: 66791--66942 Score: 304
Period size: 74 Copynumber: 2.1 Consensus size: 74
66781 GACGGGGTAT
66791 CTAGACTCACCAGTGATTCCGGAGGACGACAACCGATGTTACCAACAAAGGCCATGCTAAGATTG
1 CTAGACTCACCAGTGATTCCGGAGGACGACAACCGATGTTACCAACAAAGGCCATGCTAAGATTG
66856 TCCACGTAA
66 TCCACGTAA
66865 CTAGACTCACCAGTGATTCCGGAGGACGACAACCGATGTTACCAACAAAGGCCATGCTAAGATTG
1 CTAGACTCACCAGTGATTCCGGAGGACGACAACCGATGTTACCAACAAAGGCCATGCTAAGATTG
66930 TCCACGTAA
66 TCCACGTAA
66939 CTAG
1 CTAG
66943 GGTTTCCAAT
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 78 1.00
ACGTcount: A:0.32, C:0.27, G:0.22, T:0.19
Consensus pattern (74 bp):
CTAGACTCACCAGTGATTCCGGAGGACGACAACCGATGTTACCAACAAAGGCCATGCTAAGATTG
TCCACGTAA
Found at i:68322 original size:45 final size:45
Alignment explanation
Indices: 68216--68335 Score: 168
Period size: 45 Copynumber: 2.7 Consensus size: 45
68206 TAAGATCAAG
* *
68216 ATAACTATAAAATAATATTTGTTCACAATTTTATTAAAAATTGAA
1 ATAATTATAAAATAATATTTGTTCATAATTTTATTAAAAATTGAA
** * * *
68261 ATAATTATGGAGTAATATTTGTCCATAATTTTATTAAAGATTGAA
1 ATAATTATAAAATAATATTTGTTCATAATTTTATTAAAAATTGAA
*
68306 ATAATTATAAAATAATATTCGTTCATAATT
1 ATAATTATAAAATAATATTTGTTCATAATT
68336 CTAAGACGGT
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 63 1.00
ACGTcount: A:0.45, C:0.06, G:0.07, T:0.42
Consensus pattern (45 bp):
ATAATTATAAAATAATATTTGTTCATAATTTTATTAAAAATTGAA
Found at i:68967 original size:20 final size:20
Alignment explanation
Indices: 68942--68983 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
68932 TGATACCAGT
68942 AACACGTGACACATGATACC
1 AACACGTGACACATGATACC
*
68962 AACACGTGACACGTGATACC
1 AACACGTGACACATGATACC
68982 AA
1 AA
68984 TGACACATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.40, C:0.29, G:0.17, T:0.14
Consensus pattern (20 bp):
AACACGTGACACATGATACC
Found at i:68994 original size:23 final size:22
Alignment explanation
Indices: 68924--68995 Score: 85
Period size: 23 Copynumber: 3.3 Consensus size: 22
68914 CAACCGAATG
*
68924 GTGACACGTGATACCAGTAACAC
1 GTGACACGTGATACCAAT-ACAC
*
68947 GTGACACATGATACC-A-ACAC
1 GTGACACGTGATACCAATACAC
68967 GTGACACGTGATACCAATGACAC
1 GTGACACGTGATACCAAT-ACAC
*
68990 ATGACA
1 GTGACA
68996 TCATTCGATT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
20 18 0.43
21 1 0.02
23 23 0.55
ACGTcount: A:0.38, C:0.26, G:0.19, T:0.17
Consensus pattern (22 bp):
GTGACACGTGATACCAATACAC
Found at i:70789 original size:235 final size:236
Alignment explanation
Indices: 70377--70820 Score: 881
Period size: 235 Copynumber: 1.9 Consensus size: 236
70367 CGATGATCCT
70377 AGAAGCCCCAGAAACTCTTGCTCCCTCAGTAGCCTAAGTTTTCACAAAAGAGAATCAAGTACATT
1 AGAAGCCCCAGAAACTCTTGCTCCCTCAGTAGCCTAAGTTTTCACAAAAGAGAATCAAGTACATT
70442 AAGAGTTTCCTAGTTGCCAAATGGAGAAAAACTGAAAAGCAACAAAAATAACTCACAGCAAGACC
66 AAGAGTTTCCTAGTTGCCAAATGGAGAAAAACTGAAAAGCAACAAAAATAACTCACAGCAAGACC
70507 AACAGCACCGAGTCCAAAAACTGCAACGGACTGACCCTTTTTCGGTTTAGCGACATTCACAGTGG
131 AACAGCACCGAGTCCAAAAACTGCAACGGACTGACCCTTTTTCGGTTTAGCGACATTCACAGTGG
70572 CACCAAAACCTGCAAGCATAGAAGAATTCATAAGTTGTTAA
196 CACCAAAACCTGCAAGCATAGAAGAATTCATAAGTTGTTAA
70613 AGAAGCCCCAGAAACTCTTGCTCCCTCAGTAGCCTAAGTTTTCACAAAAGAGAATCAAGTACATT
1 AGAAGCCCCAGAAACTCTTGCTCCCTCAGTAGCCTAAGTTTTCACAAAAGAGAATCAAGTACATT
70678 AAGA-TTTCCTAGTTGCCAAATGGAGAAAAACTGAAAAGCAACAAAAATAACTCACAGCAAGACC
66 AAGAGTTTCCTAGTTGCCAAATGGAGAAAAACTGAAAAGCAACAAAAATAACTCACAGCAAGACC
70742 AACAGCACCGAGTCCAAAAACTGCAACGGACTGACCCTTTTTCGGTTTAGCGACATTCACAGTGG
131 AACAGCACCGAGTCCAAAAACTGCAACGGACTGACCCTTTTTCGGTTTAGCGACATTCACAGTGG
70807 CACCAAAACCTGCA
196 CACCAAAACCTGCA
70821 TCCTAGCTTG
Statistics
Matches: 208, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
235 139 0.67
236 69 0.33
ACGTcount: A:0.38, C:0.25, G:0.17, T:0.20
Consensus pattern (236 bp):
AGAAGCCCCAGAAACTCTTGCTCCCTCAGTAGCCTAAGTTTTCACAAAAGAGAATCAAGTACATT
AAGAGTTTCCTAGTTGCCAAATGGAGAAAAACTGAAAAGCAACAAAAATAACTCACAGCAAGACC
AACAGCACCGAGTCCAAAAACTGCAACGGACTGACCCTTTTTCGGTTTAGCGACATTCACAGTGG
CACCAAAACCTGCAAGCATAGAAGAATTCATAAGTTGTTAA
Found at i:72578 original size:30 final size:30
Alignment explanation
Indices: 72544--72601 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
72534 CATTTAGTCT
* *
72544 GTTTGTAATATGGTCCCATCGTAACCGTTC
1 GTTTGCAATATGGTCCCAACGTAACCGTTC
*
72574 GTTTGCAATATGGTCCCAACTTAACCGT
1 GTTTGCAATATGGTCCCAACGTAACCGT
72602 ATGTTTGACG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.34
Consensus pattern (30 bp):
GTTTGCAATATGGTCCCAACGTAACCGTTC
Found at i:72608 original size:30 final size:29
Alignment explanation
Indices: 72543--72608 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 29
72533 TCATTTAGTC
* *
72543 TGTTTGTAATATGGTCCCATCGTAACCGT
1 TGTTTGCAATATGGTCCCAACGTAACCGT
*
72572 TCGTTTGCAATATGGTCCCAACTTAACCGT
1 T-GTTTGCAATATGGTCCCAACGTAACCGT
72602 ATGTTTG
1 -TGTTTG
72609 ACGTCGTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 1 0.03
30 30 0.94
31 1 0.03
ACGTcount: A:0.21, C:0.21, G:0.20, T:0.38
Consensus pattern (29 bp):
TGTTTGCAATATGGTCCCAACGTAACCGT
Found at i:74140 original size:23 final size:23
Alignment explanation
Indices: 74109--74156 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
74099 TTACTTGCTA
*
74109 TTTATTTGTTGTTTAATTT-TTAT
1 TTTAGTTGTTGTTT-ATTTGTTAT
74132 TTTAGTTGTTGTTTATTTGTTAT
1 TTTAGTTGTTGTTTATTTGTTAT
74155 TT
1 TT
74157 ATTTGCTGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 4 0.17
23 19 0.83
ACGTcount: A:0.15, C:0.00, G:0.12, T:0.73
Consensus pattern (23 bp):
TTTAGTTGTTGTTTATTTGTTAT
Found at i:74151 original size:11 final size:11
Alignment explanation
Indices: 74109--74161 Score: 54
Period size: 11 Copynumber: 4.7 Consensus size: 11
74099 TTACTTGCTA
74109 TTTATTTGTTG
1 TTTATTTGTTG
*
74120 TTTAATTT-TTAT
1 TTT-ATTTGTT-G
*
74132 TTTAGTTGTTG
1 TTTATTTGTTG
*
74143 TTTATTTGTTA
1 TTTATTTGTTG
74154 TTTATTTG
1 TTTATTTG
74162 CTGTGAATTC
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
11 25 0.74
12 9 0.26
ACGTcount: A:0.15, C:0.00, G:0.13, T:0.72
Consensus pattern (11 bp):
TTTATTTGTTG
Found at i:75141 original size:29 final size:29
Alignment explanation
Indices: 75099--75161 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 29
75089 AGCTTCAATA
*
75099 TGTGTTGATGGATGTGAACTGCCATATTT
1 TGTGTTGATAGATGTGAACTGCCATATTT
* * * *
75128 TGTGTTGATAGATGTTATCTGTCATCTTT
1 TGTGTTGATAGATGTGAACTGCCATATTT
75157 TGTGT
1 TGTGT
75162 CATTTTTTGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.17, C:0.10, G:0.25, T:0.48
Consensus pattern (29 bp):
TGTGTTGATAGATGTGAACTGCCATATTT
Found at i:75578 original size:35 final size:35
Alignment explanation
Indices: 75504--75571 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
75494 TTCATGTTCA
* *
75504 AAATTCAAAAATACCTCAATTTCATTCTAAACCCC
1 AAATTCAAAAATAACTCAATTACATTCTAAACCCC
* *
75539 AAATTCTAAAATAATTCAATTACATTCTAAACC
1 AAATTCAAAAATAACTCAATTACATTCTAAACC
75572 TTAAATTAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.31
Consensus pattern (35 bp):
AAATTCAAAAATAACTCAATTACATTCTAAACCCC
Found at i:75629 original size:35 final size:35
Alignment explanation
Indices: 75574--75651 Score: 120
Period size: 35 Copynumber: 2.2 Consensus size: 35
75564 TCTAAACCTT
* *
75574 AAATTAAAGTATTTTAGAATTTGGGGTTTAGAATA
1 AAATTGAATTATTTTAGAATTTGGGGTTTAGAATA
* *
75609 TAATTGAATTATTTTGGAATTTGGGGTTTAGAATA
1 AAATTGAATTATTTTAGAATTTGGGGTTTAGAATA
75644 AAATTGAA
1 AAATTGAA
75652 GAATGTTTTG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.41
Consensus pattern (35 bp):
AAATTGAATTATTTTAGAATTTGGGGTTTAGAATA
Found at i:76199 original size:5 final size:5
Alignment explanation
Indices: 76189--76213 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
76179 TACCTGATTA
76189 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
76214 TTAATTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:84483 original size:43 final size:41
Alignment explanation
Indices: 84416--84527 Score: 109
Period size: 43 Copynumber: 2.7 Consensus size: 41
84406 GCCATCTATT
* * * *
84416 ATTTAAACTCAACGACGGAGGATATCGTACCCACAAATCCACG
1 ATTTCAACTCCACGACAGAAGATATCGTACCCAC--ATCCACG
* * *
84459 ATTTCAACTCCACGACAGAAGATATCGTGCCCACGTCCACT
1 ATTTCAACTCCACGACAGAAGATATCGTACCCACATCCACG
* *
84500 ATTTCAACTTCACGA-TGAAGGATATCGT
1 ATTTCAACTCCACGACAGAA-GATATCGT
84528 TCCAACTCTA
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
40 3 0.05
41 27 0.46
43 29 0.49
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (41 bp):
ATTTCAACTCCACGACAGAAGATATCGTACCCACATCCACG
Found at i:86577 original size:4 final size:4
Alignment explanation
Indices: 86568--86657 Score: 58
Period size: 4 Copynumber: 21.2 Consensus size: 4
86558 TTATTATTAT
* *
86568 TTTA TTTA TTTA TTTTA TTTTA TTTA TATGTA TATA TTTTC TTTA -TTA
1 TTTA TTTA TTTA -TTTA -TTTA TTTA T-T-TA TTTA -TTTA TTTA TTTA
* * *
86616 TTCA TCTTA TTTA TTTG TTTA TTTTT TTTA TTT- TTTA TTTA T
1 TTTA T-TTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA TTTA T
86658 ACTTCTTTTT
Statistics
Matches: 68, Mismatches: 10, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
3 6 0.09
4 41 0.60
5 18 0.26
6 3 0.04
ACGTcount: A:0.21, C:0.03, G:0.02, T:0.73
Consensus pattern (4 bp):
TTTA
Found at i:86578 original size:9 final size:9
Alignment explanation
Indices: 86564--86649 Score: 63
Period size: 9 Copynumber: 9.8 Consensus size: 9
86554 CTAATTATTA
86564 TTATTTTAT
1 TTATTTTAT
86573 TTA-TTTATT
1 TTATTTTA-T
86582 TTATTTTAT
1 TTATTTTAT
*
86591 TTATATGTAT
1 TTAT-TTTAT
* *
86601 ATATTTTCT
1 TTATTTTAT
86610 TTA--TTAT
1 TTATTTTAT
* *
86617 TCATCTTAT
1 TTATTTTAT
*
86626 TTA-TTTGT
1 TTATTTTAT
*
86634 TTATTTTTT
1 TTATTTTAT
86643 TTATTTT
1 TTATTTT
86650 TTATTTATAC
Statistics
Matches: 60, Mismatches: 11, Indels: 12
0.72 0.13 0.14
Matches are distributed among these distances:
7 5 0.08
8 10 0.17
9 34 0.57
10 11 0.18
ACGTcount: A:0.21, C:0.03, G:0.02, T:0.73
Consensus pattern (9 bp):
TTATTTTAT
Found at i:86605 original size:24 final size:24
Alignment explanation
Indices: 86558--86617 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
86548 CATGTTCTAA
* *
86558 TTATTATTATTTTATTTATTTATT
1 TTATTATTATTTTATGTATATATT
86582 TTATT-TTATTTATATGTATATATT
1 TTATTATTATTT-TATGTATATATT
*
86606 TTCTTTATTATT
1 TT-ATTATTATT
86618 CATCTTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
23 6 0.20
24 17 0.57
25 2 0.07
26 5 0.17
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.72
Consensus pattern (24 bp):
TTATTATTATTTTATGTATATATT
Found at i:86829 original size:9 final size:9
Alignment explanation
Indices: 86815--86858 Score: 63
Period size: 9 Copynumber: 4.9 Consensus size: 9
86805 TATCGTTATA
86815 TTTTATTTT
1 TTTTATTTT
86824 TTTTATTTT
1 TTTTATTTT
86833 TTTTATTTT
1 TTTTATTTT
86842 TATTT-TTTT
1 T-TTTATTTT
*
86851 CTTTATTT
1 TTTTATTT
86859 ACTTTTCTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
8 3 0.09
9 26 0.81
10 3 0.09
ACGTcount: A:0.11, C:0.02, G:0.00, T:0.86
Consensus pattern (9 bp):
TTTTATTTT
Found at i:86833 original size:15 final size:14
Alignment explanation
Indices: 86813--86864 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 14
86803 TTTATCGTTA
*
86813 TATTTTATTTTTTT
1 TATTTTTTTTTTTT
86827 TATTTTTTTTATTTT
1 TATTTTTTTT-TTTT
86842 TATTTTTTTCTTTATT
1 TATTTTTTT-TTT-TT
86858 TACTTTT
1 TA-TTTT
86865 CTTATCTTTG
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
14 9 0.27
15 15 0.45
16 5 0.15
17 4 0.12
ACGTcount: A:0.13, C:0.04, G:0.00, T:0.83
Consensus pattern (14 bp):
TATTTTTTTTTTTT
Found at i:86909 original size:14 final size:15
Alignment explanation
Indices: 86866--86941 Score: 63
Period size: 14 Copynumber: 5.2 Consensus size: 15
86856 TTTACTTTTC
86866 TTATCTTTGCTTTATT
1 TTATCTTT-CTTTATT
* *
86882 TTTTCTTTCCTTATT
1 TTATCTTTCTTTATT
86897 TTATC-TTCTTTATT
1 TTATCTTTCTTTATT
86911 TTCAT-TTGTC-TT-TT
1 TT-ATCTT-TCTTTATT
*
86925 ATAT-TTTCTTTATT
1 TTATCTTTCTTTATT
86939 TTA
1 TTA
86942 AATTTATTTA
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
12 2 0.04
13 6 0.12
14 17 0.35
15 15 0.31
16 9 0.18
ACGTcount: A:0.13, C:0.13, G:0.03, T:0.71
Consensus pattern (15 bp):
TTATCTTTCTTTATT
Found at i:86957 original size:28 final size:27
Alignment explanation
Indices: 86895--86958 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
86885 TCTTTCCTTA
* * *
86895 TTTTATCTTCTTTATTTTCATTTGTCT
1 TTTTATTTTCTTTATTTTAATTTATCT
86922 TTTATATTTTCTTTATTTTAAATTTAT-T
1 TTT-TATTTTCTTTATTTT-AATTTATCT
86950 TATTTATTT
1 T-TTTATTT
86959 ATTTATTACC
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
27 3 0.10
28 21 0.68
29 7 0.23
ACGTcount: A:0.19, C:0.08, G:0.02, T:0.72
Consensus pattern (27 bp):
TTTTATTTTCTTTATTTTAATTTATCT
Found at i:94940 original size:23 final size:23
Alignment explanation
Indices: 94910--94961 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
94900 ACCTTATTAA
94910 ACACTCCAAAGAAAAGTAGGATG
1 ACACTCCAAAGAAAAGTAGGATG
94933 ACACTCCAAAGAAAAGTAGGATG
1 ACACTCCAAAGAAAAGTAGGATG
94956 ACACTC
1 ACACTC
94962 AATTCTCTCG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.46, C:0.21, G:0.19, T:0.13
Consensus pattern (23 bp):
ACACTCCAAAGAAAAGTAGGATG
Done.