genome.fa.s4876.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004876.1 Hibiscus syriacus cultivar Beakdansim tig00010990_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110493

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2599--2686	33	2.7	33	89	3	126	23	12	25	38	1.90
6263--6337	34	2.2	35	80	9	91	20	25	2	52	1.60
6558--7012	65	7.0	65	88	1	696	32	20	14	32	1.93
7877--8324	65	6.9	65	91	1	709	32	21	14	31	1.94
15670--15726	28	2.0	28	100	0	114	43	21	10	24	1.83
17572--17599	2	14.0	2	100	0	56	50	0	0	50	1.00
19775--19824	25	2.0	25	100	0	100	52	8	4	36	1.50
27773--27804	16	2.0	16	93	0	55	28	3	0	68	1.04
27789--27861	20	3.8	20	68	24	57	45	1	1	52	1.18
28084--28144	30	2.0	30	90	0	95	42	3	1	52	1.27
35787--35819	2	16.5	2	87	12	50	48	3	0	48	1.17
36775--36808	6	5.7	6	100	0	68	17	17	0	64	1.29
37546--37633	42	2.1	43	93	2	151	42	11	18	28	1.85
40049--40086	19	2.0	19	100	0	76	42	26	10	21	1.85
41992--42063	29	2.5	29	90	0	108	25	23	33	18	1.97
45950--46001	15	3.5	15	89	0	77	9	17	65	7	1.45
52125--52312	84	2.2	84	88	0	268	21	20	27	30	1.98
52309--52428	34	3.6	34	90	4	190	30	8	20	40	1.81
52300--52424	67	1.9	66	90	5	198	29	8	20	40	1.83
52496--52560	21	3.4	21	64	24	61	43	13	20	23	1.87
52479--52583	36	2.9	36	94	0	183	41	14	20	23	1.88
52976--54161	106	11.2	106	91	0	1807	23	17	23	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53001--54161	425	2.7	424	91	0	1847	23	18	23	34	1.96
61602--61627	2	13.0	2	100	0	52	50	0	0	50	1.00
66444--66507	29	2.1	31	83	11	80	42	3	15	39	1.63
66867--66895	15	1.9	15	100	0	58	37	0	20	41	1.53
72833--72937	37	2.8	37	85	0	138	41	14	14	29	1.85
73294--73336	18	2.5	17	85	7	61	25	4	2	67	1.22
78875--79411	183	2.9	183	95	0	959	27	20	20	30	1.98
80592--80708	36	3.1	36	69	4	90	26	18	16	38	1.92
80551--80725	72	2.4	75	83	8	209	26	18	13	41	1.88
80819--80893	39	1.9	39	83	5	98	25	21	13	40	1.89
80797--81104	105	3.0	104	91	2	478	29	20	12	37	1.90
81014--81089	36	2.1	36	92	0	125	22	19	15	42	1.89
81289--81919	105	6.0	105	90	2	896	33	25	17	22	1.96
82460--82556	37	2.6	37	81	0	122	42	14	12	30	1.82
82921--82963	18	2.5	17	85	7	61	25	4	2	67	1.22
84244--84297	21	2.7	20	75	16	58	61	0	0	38	0.96
85402--85441	17	2.4	17	100	0	80	27	0	10	62	1.27
90104--90266	81	2.0	81	95	0	290	23	23	26	25	2.00
99592--99670	36	2.3	35	86	6	108	50	16	8	24	1.73
100558--100632	30	2.6	31	73	12	79	58	9	1	30	1.38
101043--101085	21	2.0	21	95	0	77	20	18	30	30	1.97
102049--102087	20	2.0	20	89	0	60	30	33	15	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102114--102165	20	2.8	19	85	8	72	30	26	17	25	1.97

Tables:   1

The End!