genome.fa.s4878.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004878.1 Hibiscus syriacus cultivar Beakdansim tig00010992_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  161712

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10017--10058	15	2.7	16	82	10	52	52	4	11	30	1.59
15734--15886	14	10.9	13	74	18	71	43	4	1	50	1.30
15824--15921	2	49.5	2	82	9	112	46	3	0	50	1.17
15846--15960	51	2.2	51	92	1	185	45	7	0	46	1.32
15964--15997	15	2.2	15	89	5	50	76	11	0	11	1.02
16212--16622	182	2.3	181	88	2	601	28	18	19	32	1.96
16215--16682	182	2.6	182	85	3	541	30	17	19	32	1.95
16516--16776	134	1.9	135	82	3	321	28	19	18	33	1.95
17338--17452	44	2.6	44	80	4	124	38	23	18	20	1.93
17382--17776	38	10.1	40	81	7	306	40	17	17	24	1.91
17422--17776	38	9.2	38	84	1	431	41	17	16	24	1.89
17422--17776	114	3.1	114	87	1	476	41	17	16	24	1.89
18129--19021	257	3.5	255	84	4	1105	35	16	14	34	1.89
20761--20855	14	6.9	14	76	18	76	1	21	1	76	0.90
20759--20855	28	3.4	27	79	10	97	1	20	1	77	0.89
26502--26591	19	4.7	19	95	0	162	11	22	5	61	1.50
26966--27008	21	2.2	19	83	8	50	4	11	23	60	1.50
27791--27843	18	2.6	21	71	20	58	37	13	1	47	1.54
27727--27844	44	2.7	45	79	12	147	38	11	2	48	1.52
27827--27865	20	2.0	20	100	0	78	58	10	0	30	1.31
27868--27901	15	2.2	16	89	5	52	79	11	0	8	0.94
33393--33457	28	2.3	28	94	0	112	24	15	36	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36533--36601	24	2.9	24	86	4	95	21	13	27	37	1.90
39357--39411	24	2.3	24	87	0	74	34	20	20	25	1.96
40112--40155	22	2.0	22	95	0	79	22	20	27	29	1.99
47639--47686	23	2.0	24	88	11	73	64	4	0	31	1.12
47639--47693	20	2.5	23	82	14	71	63	3	0	32	1.12
47736--48139	37	10.6	36	77	13	339	42	9	3	44	1.53
53890--53956	34	2.0	34	84	0	89	38	19	14	26	1.91
58413--58454	20	2.0	21	86	4	59	42	21	0	35	1.53
60702--60802	34	3.0	34	86	0	130	40	21	11	25	1.88
60715--60821	34	3.1	35	74	12	98	42	21	11	25	1.86
68345--68872	206	2.5	207	84	7	660	23	10	19	45	1.82
71586--71610	2	12.5	2	100	0	50	52	0	0	48	1.00
71639--71801	85	1.9	85	83	5	213	30	17	20	31	1.96
71773--71840	13	5.2	13	94	0	109	33	17	22	26	1.96
76729--76795	33	2.0	33	91	0	107	44	23	10	20	1.82
90812--91543	87	8.5	87	72	9	351	37	14	19	28	1.91
90997--91376	174	2.2	174	80	3	419	35	13	22	29	1.92
91076--91451	174	2.2	174	80	4	402	36	14	21	27	1.92
93647--93680	15	2.3	15	100	0	68	5	35	0	58	1.22
94509--94586	3	26.0	3	94	0	138	66	0	1	32	1.00
94846--95619	113	6.8	113	91	2	1062	27	18	14	38	1.90
96408--96997	83	7.1	83	98	0	1126	36	22	13	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98150--98205	7	8.3	7	80	7	55	0	16	0	83	0.64
98149--98205	23	2.5	22	85	8	69	0	15	0	84	0.63
98148--98201	16	3.4	16	85	7	74	0	16	0	83	0.65
98157--98205	17	2.9	17	87	6	73	0	16	0	83	0.64
108783--108855	28	2.6	29	78	6	78	60	0	8	31	1.26
109478--109517	14	3.1	13	82	10	55	60	0	0	40	0.97
109491--109539	17	2.8	17	84	3	53	46	0	0	53	1.00
110379--110420	15	2.9	14	89	7	57	0	21	2	76	0.90
110379--110420	20	2.1	20	86	8	59	0	21	2	76	0.90
110929--110985	3	19.0	3	92	0	96	66	0	1	31	1.02
114952--115019	29	2.4	26	81	13	66	60	2	17	19	1.49
124016--124052	17	2.2	17	90	0	56	24	16	24	35	1.95
124800--124835	2	18.0	2	100	0	72	50	0	0	50	1.00
127370--127409	21	1.9	21	89	0	62	25	17	20	37	1.94
128679--128947	138	1.9	138	90	0	430	30	17	19	32	1.95
132985--133023	9	4.2	9	81	18	53	30	23	2	43	1.67
134407--134442	15	2.4	15	90	0	54	16	11	44	27	1.82
138439--138468	2	15.0	2	100	0	60	50	0	0	50	1.00
147979--148030	19	2.9	18	80	8	61	61	3	9	25	1.44
149681--149705	13	1.9	13	100	0	50	0	12	0	88	0.53
149694--149749	25	2.2	25	87	6	78	10	12	8	67	1.41
149695--149747	24	2.2	24	86	6	72	11	13	9	66	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153929--153984	23	2.4	23	96	0	103	3	19	14	62	1.46
154303--154354	19	2.8	19	78	16	56	61	3	9	25	1.44
158542--158576	17	2.1	17	100	0	70	40	17	11	31	1.85
161140--161296	81	1.9	81	87	12	232	20	8	4	66	1.35

Tables:   1

The End!