Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004880.1 Hibiscus syriacus cultivar Beakdansim tig00010995_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 69921
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.35
Found at i:76 original size:26 final size:26
Alignment explanation
Indices: 46--433 Score: 198
Period size: 26 Copynumber: 16.5 Consensus size: 26
36 CATTCCTAAT
46 GCATCCTTTCATGCATTTTATTTATG
1 GCATCCTTTCATGCATTTTATTTATG
*
72 GCATCCTTTTCATGC------CTTATG
1 GCATCC-TTTCATGCATTTTATTTATG
*
93 GCATCCTTTCATGCATTTCATTTATG
1 GCATCCTTTCATGCATTTTATTTATG
* * * *
119 GTATCATTTCATTC--CTTA---AT-
1 GCATCCTTTCATGCATTTTATTTATG
139 GCATCCTTTCATGCATTTTATTTATG
1 GCATCCTTTCATGCATTTTATTTATG
* *
165 ACATCCTTTCATGC--CTTA---AT-
1 GCATCCTTTCATGCATTTTATTTATG
**
185 GCATCCTTT-ATGCATTTCGTTTATG
1 GCATCCTTTCATGCATTTTATTTATG
* *
210 GAATCCTTTCATGC--CTTA---AT-
1 GCATCCTTTCATGCATTTTATTTATG
* * *
230 GCATCCTTTCAAGAATTTCATTTATG
1 GCATCCTTTCATGCATTTTATTTATG
* *
256 GCATCTTTTCATGC--CTTA---AT-
1 GCATCCTTTCATGCATTTTATTTATG
*
276 GCATCCTTTCATGCATTTCATTTATG
1 GCATCCTTTCATGCATTTTATTTATG
* *
302 GCATCCTTTCATCCATTTCATTTATG
1 GCATCCTTTCATGCATTTTATTTATG
* *
328 GCATCCTTTCGTGC--CTTA---AT-
1 GCATCCTTTCATGCATTTTATTTATG
* * *
348 GCATCCTTTAATTCATTTCATTTATG
1 GCATCCTTTCATGCATTTTATTTATG
*
374 GCATCCTTTCATG-A----CTTTAT-
1 GCATCCTTTCATGCATTTTATTTATG
*
394 GCATCCTTTAATGCATTTTTATTTATG
1 GCATCCTTTCATGCA-TTTTATTTATG
*
421 GTAT-CTTTCATGC
1 GCATCCTTTCATGC
434 CTTAATGCAT
Statistics
Matches: 266, Mismatches: 51, Indels: 90
0.65 0.13 0.22
Matches are distributed among these distances:
19 4 0.02
20 74 0.28
21 28 0.11
22 9 0.03
24 12 0.05
25 17 0.06
26 111 0.42
27 11 0.04
ACGTcount: A:0.20, C:0.23, G:0.11, T:0.46
Consensus pattern (26 bp):
GCATCCTTTCATGCATTTTATTTATG
Found at i:104 original size:20 final size:21
Alignment explanation
Indices: 67--106 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
57 TGCATTTTAT
67 TTATGGCATCCTTTTCATGCC
1 TTATGGCATCCTTTTCATGCC
88 TTATGGCATCC-TTTCATGC
1 TTATGGCATCCTTTTCATGC
107 ATTTCATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.15, C:0.28, G:0.15, T:0.42
Consensus pattern (21 bp):
TTATGGCATCCTTTTCATGCC
Found at i:146 original size:46 final size:46
Alignment explanation
Indices: 1--313 Score: 449
Period size: 46 Copynumber: 6.9 Consensus size: 46
* *
1 AATGCATCCTTTCATGCATTTC-TTTATGG--TCATTTCATTCC-T
1 AATGCATCCTTTCATGCATTTCATTTATGGCATCCTTTCATGCCTT
*
43 AATGCATCCTTTCATGCATTTTATTTATGGCATCCTTTTCATGCCTT
1 AATGCATCCTTTCATGCATTTCATTTATGGCATCC-TTTCATGCCTT
* * *
90 -ATGGCATCCTTTCATGCATTTCATTTATGGTATCATTTCATTCCTT
1 AAT-GCATCCTTTCATGCATTTCATTTATGGCATCCTTTCATGCCTT
* *
136 AATGCATCCTTTCATGCATTTTATTTATGACATCCTTTCATGCCTT
1 AATGCATCCTTTCATGCATTTCATTTATGGCATCCTTTCATGCCTT
* *
182 AATGCATCCTTT-ATGCATTTCGTTTATGGAATCCTTTCATGCCTT
1 AATGCATCCTTTCATGCATTTCATTTATGGCATCCTTTCATGCCTT
* * *
227 AATGCATCCTTTCAAGAATTTCATTTATGGCATCTTTTCATGCCTT
1 AATGCATCCTTTCATGCATTTCATTTATGGCATCCTTTCATGCCTT
273 AATGCATCCTTTCATGCATTTCATTTATGGCATCCTTTCAT
1 AATGCATCCTTTCATGCATTTCATTTATGGCATCCTTTCAT
314 CCATTTCATT
Statistics
Matches: 239, Mismatches: 24, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
42 21 0.09
43 7 0.03
45 43 0.18
46 136 0.57
47 32 0.13
ACGTcount: A:0.21, C:0.23, G:0.11, T:0.46
Consensus pattern (46 bp):
AATGCATCCTTTCATGCATTTCATTTATGGCATCCTTTCATGCCTT
Found at i:170 original size:72 final size:72
Alignment explanation
Indices: 88--386 Score: 300
Period size: 72 Copynumber: 4.2 Consensus size: 72
78 TTTTCATGCC
* *
88 TTATGGCATCCTTTCATGCATTTCATTTATGGTATCATTTCATTCCTTAATGCATCCTTTCATGC
1 TTATGGCATCCTTTCATGCATTTCATTTATGGCATCATTTCATGCCTTAATGCATCCTTTCATGC
*
153 ATTTTAT
66 ATTTCAT
* * * * *
160 TTATGACATCCTTTCATGC----C-TTAAT-GCATCCTTT-ATGCATTTCGTTTATGGAATCCTT
1 TTATGGCATCCTTTCATGCATTTCATTTATGGCATCATTTCATGC----C-TTAAT-GCATCCTT
218 TCATGC----C-T
60 TCATGCATTTCAT
* * * *
226 TAAT-GCATCCTTTCAAGAATTTCATTTATGGCATCTTTTCATGCCTTAATGCATCCTTTCATGC
1 TTATGGCATCCTTTCATGCATTTCATTTATGGCATCATTTCATGCCTTAATGCATCCTTTCATGC
290 ATTTCAT
66 ATTTCAT
* * * * *
297 TTATGGCATCCTTTCATCCATTTCATTTATGGCATCCTTTCGTGCCTTAATGCATCCTTTAATTC
1 TTATGGCATCCTTTCATGCATTTCATTTATGGCATCATTTCATGCCTTAATGCATCCTTTCATGC
362 ATTTCAT
66 ATTTCAT
369 TTATGGCATCCTTTCATG
1 TTATGGCATCCTTTCATG
387 ACTTTATGCA
Statistics
Matches: 183, Mismatches: 25, Indels: 38
0.74 0.10 0.15
Matches are distributed among these distances:
65 14 0.08
66 24 0.13
67 8 0.04
68 2 0.01
69 2 0.01
70 9 0.05
71 25 0.14
72 99 0.54
ACGTcount: A:0.21, C:0.23, G:0.11, T:0.45
Consensus pattern (72 bp):
TTATGGCATCCTTTCATGCATTTCATTTATGGCATCATTTCATGCCTTAATGCATCCTTTCATGC
ATTTCAT
Found at i:238 original size:91 final size:91
Alignment explanation
Indices: 1--313 Score: 465
Period size: 91 Copynumber: 3.4 Consensus size: 91
1 AATGCATCCTTTCATGCATTTC-TTTATGG-TCATTTCATTCC-TAATGCATCCTTTCATGCATT
1 AATGCATCCTTTCATGCATTTCATTTATGGATCATTTCATTCCTTAATGCATCCTTTCATGCATT
63 TTATTTATGGCATCCTTTTCATGCCTT
66 TTATTTATGGCATCC-TTTCATGCCTT
90 -ATGGCATCCTTTCATGCATTTCATTTATGGTATCATTTCATTCCTTAATGCATCCTTTCATGCA
1 AAT-GCATCCTTTCATGCATTTCATTTATGG-ATCATTTCATTCCTTAATGCATCCTTTCATGCA
*
154 TTTTATTTATGACATCCTTTCATGCCTT
64 TTTTATTTATGGCATCCTTTCATGCCTT
* * * * *
182 AATGCATCCTTT-ATGCATTTCGTTTATGGAATCCTTTCATGCCTTAATGCATCCTTTCAAGAAT
1 AATGCATCCTTTCATGCATTTCATTTATGG-ATCATTTCATTCCTTAATGCATCCTTTCATGCAT
* *
246 TTCATTTATGGCATCTTTTCATGCCTT
65 TTTATTTATGGCATCCTTTCATGCCTT
*
273 AATGCATCCTTTCATGCATTTCATTTATGGCATCCTTTCAT
1 AATGCATCCTTTCATGCATTTCATTTATGG-ATCATTTCAT
314 CCATTTCATT
Statistics
Matches: 205, Mismatches: 12, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
88 2 0.01
89 19 0.09
90 7 0.03
91 82 0.40
92 58 0.28
93 37 0.18
ACGTcount: A:0.21, C:0.23, G:0.11, T:0.46
Consensus pattern (91 bp):
AATGCATCCTTTCATGCATTTCATTTATGGATCATTTCATTCCTTAATGCATCCTTTCATGCATT
TTATTTATGGCATCCTTTCATGCCTT
Found at i:248 original size:137 final size:137
Alignment explanation
Indices: 1--313 Score: 438
Period size: 137 Copynumber: 2.3 Consensus size: 137
* * * *
1 AATGCATCCTTTCATGCA-TTTCTTTATG-GTCATTTCATTCCTAATGCATCCTTTCATGCATTT
1 AATGCATCCTTTCATGCATTTTATTTATGCATCCTTTCATGCCTAATGCATCCTTTCATGCATTT
* * * * *
64 TATTTATGGCATCCTTTTCATGCCTTATGGCATCCTTTCATGCATTTCATTTATGGTATCATTTC
66 CATTTATGGAATCCTTTTCATGCCTTATGGCATCCTTTCAAGAATTTCATTTATGGCATCATTTC
*
129 ATTCCTT
131 ATGCCTT
136 AATGCATCCTTTCATGCATTTTATTTATGACATCCTTTCATGCCTTAATGCATCCTTT-ATGCAT
1 AATGCATCCTTTCATGCATTTTATTTATG-CATCCTTTCATGCC-TAATGCATCCTTTCATGCAT
* *
200 TTCGTTTATGGAATCC-TTTCATGCCTTAAT-GCATCCTTTCAAGAATTTCATTTATGGCATCTT
64 TTCATTTATGGAATCCTTTTCATGCCTT-ATGGCATCCTTTCAAGAATTTCATTTATGGCATCAT
263 TTCATGCCTT
128 TTCATGCCTT
*
273 AATGCATCCTTTCATGCATTTCATTTATGGCATCCTTTCAT
1 AATGCATCCTTTCATGCATTTTATTTAT-GCATCCTTTCAT
314 CCATTTCATT
Statistics
Matches: 159, Mismatches: 13, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
135 18 0.11
136 9 0.06
137 87 0.55
138 32 0.20
139 13 0.08
ACGTcount: A:0.21, C:0.23, G:0.11, T:0.46
Consensus pattern (137 bp):
AATGCATCCTTTCATGCATTTTATTTATGCATCCTTTCATGCCTAATGCATCCTTTCATGCATTT
CATTTATGGAATCCTTTTCATGCCTTATGGCATCCTTTCAAGAATTTCATTTATGGCATCATTTC
ATGCCTT
Found at i:343 original size:118 final size:119
Alignment explanation
Indices: 185--431 Score: 349
Period size: 118 Copynumber: 2.1 Consensus size: 119
175 ATGCCTTAAT
* *
185 GCATCCTTT-ATGCATTTCGTTTATGGAATCCTTTCATGCCTTAATGCATCCTTTCAA-GAATTT
1 GCATCCTTTCATCCATTTCATTTATGGAATCCTTTCATGCCTTAATGCATCCTTT-AATGAATTT
* * *
248 CATTTATGGCATCTTTTCATGCCTTAATGCATCCTTTCATGCA-TTTCATTTATG
65 CATTTATGGCATCCTTTCATGACTTAATGCATCCTTTAATGCATTTTCATTTATG
* * **
302 GCATCCTTTCATCCATTTCATTTATGGCATCCTTTCGTGCCTTAATGCATCCTTTAATTCATTTC
1 GCATCCTTTCATCCATTTCATTTATGGAATCCTTTCATGCCTTAATGCATCCTTTAATGAATTTC
* *
367 ATTTATGGCATCCTTTCATGACTTTATGCATCCTTTAATGCATTTTTATTTATG
66 ATTTATGGCATCCTTTCATGACTTAATGCATCCTTTAATGCATTTTCATTTATG
*
421 GTAT-CTTTCAT
1 GCATCCTTTCAT
432 GCCTTAATGC
Statistics
Matches: 115, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
117 11 0.10
118 91 0.79
119 13 0.11
ACGTcount: A:0.21, C:0.22, G:0.11, T:0.46
Consensus pattern (119 bp):
GCATCCTTTCATCCATTTCATTTATGGAATCCTTTCATGCCTTAATGCATCCTTTAATGAATTTC
ATTTATGGCATCCTTTCATGACTTAATGCATCCTTTAATGCATTTTCATTTATG
Found at i:354 original size:46 final size:46
Alignment explanation
Indices: 302--465 Score: 222
Period size: 46 Copynumber: 3.6 Consensus size: 46
292 TTCATTTATG
* * *
302 GCATCCTTTCATCCATTTCATTTATGGCATCCTTTCGTGCCTTAAT
1 GCATCCTTTAATGCATTTCATTTATGGCATCCTTTCATGCCTTAAT
* * *
348 GCATCCTTTAATTCATTTCATTTATGGCATCCTTTCATGACTTTAT
1 GCATCCTTTAATGCATTTCATTTATGGCATCCTTTCATGCCTTAAT
* *
394 GCATCCTTTAATGCATTTTTATTTATGGTAT-CTTTCATGCCTTAAT
1 GCATCCTTTAATGCA-TTTCATTTATGGCATCCTTTCATGCCTTAAT
* *
440 GCATCCTTTCATGAATTTCATTTATG
1 GCATCCTTTAATGCATTTCATTTATG
466 ATTCATTTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
45 10 0.10
46 81 0.78
47 13 0.12
ACGTcount: A:0.21, C:0.22, G:0.10, T:0.47
Consensus pattern (46 bp):
GCATCCTTTAATGCATTTCATTTATGGCATCCTTTCATGCCTTAAT
Found at i:443 original size:164 final size:163
Alignment explanation
Indices: 139--465 Score: 496
Period size: 164 Copynumber: 2.0 Consensus size: 163
129 ATTCCTTAAT
* * *
139 GCATCCTTTCATGCATTTTATTTATGACATCCTTTCATGCCTTAATGCATCCTTTATGCATTTCG
1 GCATCCTTTCATCCATTTCATTTATGACATCCTTTCATGCCTTAATGCATCCTTTATGCATTTCA
*
204 TTTATGGAATCCTTTCATGCCTTAATGCATCCTTTCAAGAATTTCATTTATGGCATCTTTTCATG
66 TTTATGGAATCCTTTCATGACTTAATGCATCCTTTCAAGAATTTCATTTATGGCATCTTTTCATG
*
269 CCTTAATGCATCCTTTCATGCATTTCATTTATG
131 CCTTAATGCATCCTTTCATGAATTTCATTTATG
* * *
302 GCATCCTTTCATCCATTTCATTTATGGCATCCTTTCGTGCCTTAATGCATCCTTTAATTCATTTC
1 GCATCCTTTCATCCATTTCATTTATGACATCCTTTCATGCCTTAATGCATCCTTT-ATGCATTTC
* * * * *
367 ATTTATGGCATCCTTTCATGACTTTATGCATCCTTT-AATGCATTTTTATTTATGGTATC-TTTC
65 ATTTATGGAATCCTTTCATGACTTAATGCATCCTTTCAA-G-AATTTCATTTATGGCATCTTTTC
430 ATGCCTTAATGCATCCTTTCATGAATTTCATTTATG
128 ATGCCTTAATGCATCCTTTCATGAATTTCATTTATG
466 ATTCATTTTA
Statistics
Matches: 148, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
163 53 0.36
164 80 0.54
165 15 0.10
ACGTcount: A:0.21, C:0.22, G:0.11, T:0.46
Consensus pattern (163 bp):
GCATCCTTTCATCCATTTCATTTATGACATCCTTTCATGCCTTAATGCATCCTTTATGCATTTCA
TTTATGGAATCCTTTCATGACTTAATGCATCCTTTCAAGAATTTCATTTATGGCATCTTTTCATG
CCTTAATGCATCCTTTCATGAATTTCATTTATG
Found at i:458 original size:92 final size:93
Alignment explanation
Indices: 296--465 Score: 245
Period size: 92 Copynumber: 1.8 Consensus size: 93
286 ATGCATTTCA
* * *
296 TTTATGGCATCCTTTCATCCATTTCATTTATGGCATCCTTTCGTGCCTTAATGCATCCTTTAATT
1 TTTATGGCATCCTTTAATCCATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTAATG
*
361 CATTTCATTTATGGCATCCTTTCATGAC
66 AATTTCATTTATGGCATCCTTTCATGAC
* * * *
389 TTTAT-GCATCCTTTAATGCATTTTTATTTATGGTAT-CTTTCATGCCTTAATGCATCCTTTCAT
1 TTTATGGCATCCTTTAATCCA-TTTCATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTAAT
452 GAATTTCATTTATG
65 GAATTTCATTTATG
466 ATTCATTTTA
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
92 50 0.74
93 18 0.26
ACGTcount: A:0.21, C:0.21, G:0.11, T:0.48
Consensus pattern (93 bp):
TTTATGGCATCCTTTAATCCATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTAATG
AATTTCATTTATGGCATCCTTTCATGAC
Found at i:949 original size:41 final size:41
Alignment explanation
Indices: 883--974 Score: 103
Period size: 41 Copynumber: 2.2 Consensus size: 41
873 CCCTACCATG
* * * * * * *
883 GTATCGATACTTCTATATTATGGTACTGATCCTTTCTCTCA
1 GTATCGATACTACTATACTACGGTACCGATACTCTATCTCA
* *
924 GTATCGATACTACTGTACTACGGTACCGATACTCTATTTCA
1 GTATCGATACTACTATACTACGGTACCGATACTCTATCTCA
965 GTATCGATAC
1 GTATCGATAC
975 CATTTGACAA
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (41 bp):
GTATCGATACTACTATACTACGGTACCGATACTCTATCTCA
Found at i:5173 original size:81 final size:81
Alignment explanation
Indices: 5034--5285 Score: 434
Period size: 81 Copynumber: 3.1 Consensus size: 81
5024 CCGTTAGACA
* * *
5034 TTTAGTCTTTTACCCAAAGGTA-TTAGCCTTTCATCTAACTGGCATGATTGACACCTTTCTACCA
1 TTTAGTCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTTCTGCCA
*
5098 AAGGTACAATTAGGCT
66 AAGGCACAATTAGGCT
*
5114 TTTAGTCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACATCTTTCTGCCA
1 TTTAGTCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTTCTGCCA
*
5179 AAGGCACAGTTAGGCT
66 AAGGCACAATTAGGCT
5195 TTTAGTCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTTCTGCCA
1 TTTAGTCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTTCTGCCA
5260 AAGGCACAATTAGGCT
66 AAGGCACAATTAGGCT
*
5276 TTTAATCTTT
1 TTTAGTCTTT
5286 ATTTTAGAAT
Statistics
Matches: 162, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
80 21 0.13
81 141 0.87
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (81 bp):
TTTAGTCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTTCTGCCA
AAGGCACAATTAGGCT
Found at i:5271 original size:162 final size:161
Alignment explanation
Indices: 4983--5285 Score: 455
Period size: 162 Copynumber: 1.9 Consensus size: 161
4973 CAATTAATCC
* * * * *
4983 TTCATCCAACTTGGATTATTGGCATCTTTCTTCCAAATACACCGTTAGACATTTAGTCTTTTACC
1 TTCATCCAACTTGGATGATTGACATCTTTCTGCCAAAGACACAGTTAGACATTTAGTCTTTTACC
* *
5048 CAAAGGTATTAGCCTTTCATCTAACTGGCATGATTGACACCTTTCTACCAAAGGTACAATTAGGC
66 CAAAGGTATTAACCTTTCATCTAACTGGCATGATTGACACCTTTCTACCAAAGGCACAATTAGGC
*
5113 TTTTAGTCTTTTACTCAAAGGTATTTAACCT
131 TTTTAATCTTTTACTCAAAGGTATTTAACCT
* * * *
5144 TTCATCTAAC-TGGCATGATTGACATCTTTCTGCCAAAGGCACAGTTAGGCTTTTAGTCTTTTAC
1 TTCATCCAACTTGG-ATGATTGACATCTTTCTGCCAAAGACACAGTTAGACATTTAGTCTTTTAC
* *
5208 TCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTTCTGCCAAAGGCACAATTAG
65 CCAAAGGTA-TTAACCTTTCATCTAACTGGCATGATTGACACCTTTCTACCAAAGGCACAATTAG
5273 GCTTTTAATCTTT
129 GCTTTTAATCTTT
5286 ATTTTAGAAT
Statistics
Matches: 126, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
160 3 0.02
161 59 0.47
162 64 0.51
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (161 bp):
TTCATCCAACTTGGATGATTGACATCTTTCTGCCAAAGACACAGTTAGACATTTAGTCTTTTACC
CAAAGGTATTAACCTTTCATCTAACTGGCATGATTGACACCTTTCTACCAAAGGCACAATTAGGC
TTTTAATCTTTTACTCAAAGGTATTTAACCT
Found at i:5480 original size:55 final size:55
Alignment explanation
Indices: 5421--5529 Score: 130
Period size: 55 Copynumber: 2.0 Consensus size: 55
5411 ACATGGGTTA
*
5421 CACACCCACTACCAATACA-AAAATTCATAAACTTATTATGAATTTCTTAGTTTTG
1 CACACACACTACCAATA-AGAAAATTCATAAACTTATTATGAATTTCTTAGTTTTG
* * * * * * *
5476 CACACATATTGCCCATAAGGAATTTCATAACCTTATTATGAATTTCTTAGTTTT
1 CACACACACTACCAATAAGAAAATTCATAAACTTATTATGAATTTCTTAGTTTT
5530 TGAAATAATT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
54 1 0.02
55 44 0.98
ACGTcount: A:0.35, C:0.20, G:0.07, T:0.38
Consensus pattern (55 bp):
CACACACACTACCAATAAGAAAATTCATAAACTTATTATGAATTTCTTAGTTTTG
Found at i:5740 original size:46 final size:46
Alignment explanation
Indices: 5669--5785 Score: 209
Period size: 46 Copynumber: 2.6 Consensus size: 46
5659 TTATTCGTTA
5669 ATTTCA-TTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGC
1 ATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGC
* *
5714 ATTTCATTTATGGCATCCTTTTATGCCTTAATGCATCCTTTCATGC
1 ATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGC
5760 ATTTCATTTATGGCATCCTTTCATGC
1 ATTTCATTTATGGCATCCTTTCATGC
5786 ATTTCATTTA
Statistics
Matches: 68, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
45 6 0.09
46 62 0.91
ACGTcount: A:0.21, C:0.24, G:0.11, T:0.44
Consensus pattern (46 bp):
ATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGC
Found at i:5786 original size:72 final size:72
Alignment explanation
Indices: 5700--5857 Score: 271
Period size: 72 Copynumber: 2.2 Consensus size: 72
5690 ATGCCTTAAT
* *
5700 GCATCATTTCATGCATTTCATTTATGGCATCCTTTTATGCCTTAATGCATCCTTTCATGCATTTC
1 GCATCATTTCATGCATTTCATTTATGACATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTC
5765 ATTTATG
66 ATTTATG
*
5772 GCATCCTTTCATGCATTTCATTTATGACATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTC
1 GCATCATTTCATGCATTTCATTTATGACATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTC
5837 ATTTATG
66 ATTTATG
* *
5844 ACATCTTTTCATGC
1 GCATCATTTCATGC
5858 CTTAATGCAT
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 81 1.00
ACGTcount: A:0.21, C:0.24, G:0.10, T:0.45
Consensus pattern (72 bp):
GCATCATTTCATGCATTTCATTTATGACATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTC
ATTTATG
Found at i:5883 original size:118 final size:117
Alignment explanation
Indices: 5669--5903 Score: 400
Period size: 118 Copynumber: 2.0 Consensus size: 117
5659 TTATTCGTTA
* *
5669 ATTTCATTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTCATTTATGGCATCCTT
1 ATTTCATTATGACATCCTTTCATGCCTTAATGCATCATTTCATGCATTTCATTTATGACATCCTT
* *
5734 TTATGCCTTAATGCATCCTTTCATGCATTTCATTTATGGCATCCTTTCATGC
66 TTATGCCTTAATGCATCCTTTCATGCATTTCATTTATGGAACCCTTTCATGC
*
5786 ATTTCATTTATGACATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTCATTTATGACAT-CT
1 ATTTCA-TTATGACATCCTTTCATGCCTTAATGCATCATTTCATGCATTTCATTTATGACATCCT
5850 TTTCATGCCTTAATGCATCCTTTCATGCATTTCATTTATGGAACCCTTTCATGC
65 TTT-ATGCCTTAATGCATCCTTTCATGCATTTCATTTATGGAACCCTTTCATGC
5904 CTTAATGCAT
Statistics
Matches: 111, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
117 11 0.10
118 100 0.90
ACGTcount: A:0.21, C:0.24, G:0.10, T:0.44
Consensus pattern (117 bp):
ATTTCATTATGACATCCTTTCATGCCTTAATGCATCATTTCATGCATTTCATTTATGACATCCTT
TTATGCCTTAATGCATCCTTTCATGCATTTCATTTATGGAACCCTTTCATGC
Found at i:5937 original size:46 final size:46
Alignment explanation
Indices: 5772--5935 Score: 285
Period size: 46 Copynumber: 3.6 Consensus size: 46
5762 TTCATTTATG
5772 GCATCCTTTCATGCATTTCATTTATGACATCCTTTCATGCCTTAAT
1 GCATCCTTTCATGCATTTCATTTATGACATCCTTTCATGCCTTAAT
*
5818 GCATCCTTTCATGCATTTCATTTATGACATCTTTTCATGCCTTAAT
1 GCATCCTTTCATGCATTTCATTTATGACATCCTTTCATGCCTTAAT
*
5864 GCATCCTTTCATGCATTTCATTTATGGA-ACCCTTTCATGCCTTAAT
1 GCATCCTTTCATGCATTTCATTTAT-GACATCCTTTCATGCCTTAAT
*
5910 GCATCATTTCATGCATTTCATTTATG
1 GCATCCTTTCATGCATTTCATTTATG
5936 GATTCATTTT
Statistics
Matches: 113, Mismatches: 4, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
45 1 0.01
46 110 0.97
47 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.10, T:0.44
Consensus pattern (46 bp):
GCATCCTTTCATGCATTTCATTTATGACATCCTTTCATGCCTTAAT
Found at i:5944 original size:26 final size:25
Alignment explanation
Indices: 5706--5938 Score: 155
Period size: 26 Copynumber: 9.9 Consensus size: 25
5696 TAATGCATCA
5706 TTTCATGCATTTCATTTATGGCATCC
1 TTTCATGCATTTCATTTATGG-ATCC
* * *
5732 TTTTATGC----C-TTAATGCATCC
1 TTTCATGCATTTCATTTATGGATCC
5752 TTTCATGCATTTCATTTATGGCATCC
1 TTTCATGCATTTCATTTATGG-ATCC
*
5778 TTTCATGCATTTCATTTATGACATCC
1 TTTCATGCATTTCATTTATG-GATCC
* *
5804 TTTCATGC----C-TTAATGCATCC
1 TTTCATGCATTTCATTTATGGATCC
* *
5824 TTTCATGCATTTCATTTATGACATCT
1 TTTCATGCATTTCATTTATG-GATCC
* *
5850 TTTCATGC----C-TTAATGCATCC
1 TTTCATGCATTTCATTTATGGATCC
*
5870 TTTCATGCATTTCATTTATGGAACCC
1 TTTCATGCATTTCATTTATGG-ATCC
* * *
5896 TTTCATGC----C-TTAATGCATCA
1 TTTCATGCATTTCATTTATGGATCC
5916 TTTCATGCATTTCATTTATGGAT
1 TTTCATGCATTTCATTTATGGAT
5939 TCATTTTAGA
Statistics
Matches: 162, Mismatches: 21, Indels: 49
0.70 0.09 0.21
Matches are distributed among these distances:
20 46 0.28
21 20 0.12
22 4 0.02
24 4 0.02
25 22 0.14
26 66 0.41
ACGTcount: A:0.21, C:0.23, G:0.10, T:0.45
Consensus pattern (25 bp):
TTTCATGCATTTCATTTATGGATCC
Found at i:6381 original size:22 final size:22
Alignment explanation
Indices: 6355--6431 Score: 56
Period size: 22 Copynumber: 3.6 Consensus size: 22
6345 TACCCCTACC
6355 ATGGTATCGATACTTCTATACT
1 ATGGTATCGATACTTCTATACT
6377 ATGGTA-CTGATACCTTC--T-CT
1 ATGGTATC-GATA-CTTCTATACT
* * *
6397 CT-GTATCGATACTACTACACT
1 ATGGTATCGATACTTCTATACT
* *
6418 GTGGTACCGATACT
1 ATGGTATCGATACT
6432 CTCTTTCAGT
Statistics
Matches: 43, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
18 3 0.07
19 7 0.16
20 4 0.09
21 5 0.12
22 20 0.47
23 4 0.09
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (22 bp):
ATGGTATCGATACTTCTATACT
Found at i:6444 original size:41 final size:41
Alignment explanation
Indices: 6358--6445 Score: 106
Period size: 41 Copynumber: 2.1 Consensus size: 41
6348 CCCTACCATG
* * * *
6358 GTATCGATACTTCTATACTATGGTACTGATACCTTCTCTCT
1 GTATCGATACTACTACACTATGGTACCGATACCTTCTCTCA
* *
6399 GTATCGATACTACTACACTGTGGTACCGATA-CTCTCTTTCA
1 GTATCGATACTACTACACTATGGTACCGATACCT-TCTCTCA
6440 GTATCG
1 GTATCG
6446 GTGCCATTTG
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
40 2 0.05
41 38 0.95
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.38
Consensus pattern (41 bp):
GTATCGATACTACTACACTATGGTACCGATACCTTCTCTCA
Found at i:9709 original size:16 final size:16
Alignment explanation
Indices: 9684--9722 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
9674 TGCTTATCTC
* *
9684 TATGTTTTGATGGTAG
1 TATGTGTTGATGCTAG
9700 TATGTGTTGATGCTAG
1 TATGTGTTGATGCTAG
9716 TATGTGT
1 TATGTGT
9723 GATTGTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.18, C:0.03, G:0.31, T:0.49
Consensus pattern (16 bp):
TATGTGTTGATGCTAG
Found at i:12012 original size:16 final size:18
Alignment explanation
Indices: 11985--12022 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
11975 ACCGTATTGA
*
11985 TTTTCAACTTTACAAT-C
1 TTTTCAACTTTAAAATGC
12002 TTTTC-ACTTTAAAATGC
1 TTTTCAACTTTAAAATGC
12019 TTTT
1 TTTT
12023 ATTATTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.26, C:0.18, G:0.03, T:0.53
Consensus pattern (18 bp):
TTTTCAACTTTAAAATGC
Found at i:16475 original size:17 final size:17
Alignment explanation
Indices: 16450--16483 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
16440 CTTAGCCAAA
*
16450 ATTAGGGTAGTGGTGAT
1 ATTAAGGTAGTGGTGAT
16467 ATTAAGGTAGTGGTGAT
1 ATTAAGGTAGTGGTGAT
16484 GATGGATGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.38, T:0.35
Consensus pattern (17 bp):
ATTAAGGTAGTGGTGAT
Found at i:16521 original size:23 final size:24
Alignment explanation
Indices: 16480--16526 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
16470 AAGGTAGTGG
16480 TGATGATGGATGATAATGGTGATT
1 TGATGATGGATGATAATGGTGATT
*
16504 TGATGAT-GATGATGATGGTGATT
1 TGATGATGGATGATAATGGTGATT
16527 GAGAGATAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 15 0.68
24 7 0.32
ACGTcount: A:0.28, C:0.00, G:0.34, T:0.38
Consensus pattern (24 bp):
TGATGATGGATGATAATGGTGATT
Found at i:17072 original size:25 final size:25
Alignment explanation
Indices: 17036--17092 Score: 105
Period size: 25 Copynumber: 2.3 Consensus size: 25
17026 TAGTTCCTGA
17036 CATTGGATTGACGCATTCTAAGTAC
1 CATTGGATTGACGCATTCTAAGTAC
*
17061 CGTTGGATTGACGCATTCTAAGTAC
1 CATTGGATTGACGCATTCTAAGTAC
17086 CATTGGA
1 CATTGGA
17093 AAGCTAATAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (25 bp):
CATTGGATTGACGCATTCTAAGTAC
Found at i:18104 original size:7 final size:7
Alignment explanation
Indices: 18092--18119 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
18082 ACTTTCGGTC
18092 AATCGAA
1 AATCGAA
18099 AATCGAA
1 AATCGAA
18106 AATCGAA
1 AATCGAA
18113 AATCGAA
1 AATCGAA
18120 TAGAAGCGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.14, G:0.14, T:0.14
Consensus pattern (7 bp):
AATCGAA
Found at i:26864 original size:31 final size:30
Alignment explanation
Indices: 26760--26865 Score: 79
Period size: 31 Copynumber: 3.3 Consensus size: 30
26750 TAGTCGGTGT
*
26760 TGAACCTATTCAAGGAATTACCAACAGCGAC
1 TGAACCTATACAAGGAATTACCAACA-CGAC
* * *
26791 TGAACCTGCCAAAGATAAGGAATTACCAGC-CGATGC
1 TGAACCT-----ATACAAGGAATTACCAACACGA--C
*
26827 TAAACCTATACAAGGAATTACCAACAACGAC
1 TGAACCTATACAAGGAATTACCAAC-ACGAC
26858 TGAACCTA
1 TGAACCTA
26866 CCAGACTCTT
Statistics
Matches: 57, Mismatches: 9, Indels: 18
0.68 0.11 0.21
Matches are distributed among these distances:
31 30 0.53
33 3 0.05
34 3 0.05
36 21 0.37
ACGTcount: A:0.41, C:0.25, G:0.16, T:0.18
Consensus pattern (30 bp):
TGAACCTATACAAGGAATTACCAACACGAC
Found at i:28839 original size:14 final size:14
Alignment explanation
Indices: 28797--28841 Score: 81
Period size: 14 Copynumber: 3.2 Consensus size: 14
28787 AACGGTTTAC
28797 GGTCAAAGTCAATG
1 GGTCAAAGTCAATG
*
28811 AGTCAAAGTCAATG
1 GGTCAAAGTCAATG
28825 GGTCAAAGTCAATG
1 GGTCAAAGTCAATG
28839 GGT
1 GGT
28842 TGACTCAGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.36, C:0.13, G:0.29, T:0.22
Consensus pattern (14 bp):
GGTCAAAGTCAATG
Found at i:28856 original size:14 final size:14
Alignment explanation
Indices: 28839--28889 Score: 68
Period size: 14 Copynumber: 3.6 Consensus size: 14
28829 AAAGTCAATG
28839 GGTTGACTCAGATA
1 GGTTGACTCAGATA
*
28853 GGTTGACTTAGAT-
1 GGTTGACTCAGATA
*
28866 GAGTTGACTAAGATA
1 G-GTTGACTCAGATA
28881 GGTTGACTC
1 GGTTGACTC
28890 TGACGAGTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
13 1 0.03
14 30 0.94
15 1 0.03
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.31
Consensus pattern (14 bp):
GGTTGACTCAGATA
Found at i:28897 original size:28 final size:28
Alignment explanation
Indices: 28840--28898 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
28830 AAGTCAATGG
* *
28840 GTTGACTCAGATAGGTTGACTTAGATGA
1 GTTGACTAAGATAGGTTGACTTAGACGA
28868 GTTGACTAAGATAGGTTGACTCT-GACGA
1 GTTGACTAAGATAGGTTGACT-TAGACGA
28896 GTT
1 GTT
28899 AAGGCTGACT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 27 0.96
29 1 0.04
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.32
Consensus pattern (28 bp):
GTTGACTAAGATAGGTTGACTTAGACGA
Found at i:32364 original size:21 final size:21
Alignment explanation
Indices: 32338--32384 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
32328 TTTATTTTAT
32338 ACTTAATTACTAGAATTAGGG
1 ACTTAATTACTAGAATTAGGG
32359 ACTTAATTACTAGAATTAGGG
1 ACTTAATTACTAGAATTAGGG
32380 A-TTAA
1 ACTTAA
32385 ATCGAATTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 4 0.15
21 22 0.85
ACGTcount: A:0.40, C:0.09, G:0.17, T:0.34
Consensus pattern (21 bp):
ACTTAATTACTAGAATTAGGG
Found at i:34743 original size:17 final size:17
Alignment explanation
Indices: 34721--34763 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
34711 TGTTATAATC
34721 CAATTCCTCCTTAAAAT
1 CAATTCCTCCTTAAAAT
34738 CAATTCCTCCTTAAAAT
1 CAATTCCTCCTTAAAAT
34755 CAATTCCTC
1 CAATTCCTC
34764 AAACCTTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.35
Consensus pattern (17 bp):
CAATTCCTCCTTAAAAT
Found at i:36174 original size:131 final size:132
Alignment explanation
Indices: 35940--36277 Score: 396
Period size: 131 Copynumber: 2.6 Consensus size: 132
35930 ATTTTAAGAG
* * * * * * *
35940 TGAAAACGATAAGATCTAATTATTTTCAACCGAGAATAAATGACCTTTCGTGCATTAAAACAGTC
1 TGAAAACGATAATATCTAATTATTTCCAATCGAGAATAAATGACCTCTCATACCTTAAAACAGTC
* * * * *
36005 AGTTATTACTCCAATAGAAACAAAGAGATATTACTATTTCGTCTTAA-AATTCAATATTGATTCG
66 AGTTATTACTCCAATAGAAACAAAGAGATATCACTATTTCATCCTAAGAA-CCAATATTAATTCG
36069 A-A
130 AGA
* * *
36071 TGAAAATGATAATATCTAATGATTTCCAATCGAGAATAAATGATCTCTCATACCTTAAAGACA-T
1 TGAAAACGATAATATCTAATTATTTCCAATCGAGAATAAATGACCTCTCATACCTTAAA-ACAGT
* * * ** *
36135 CATTTATTGCTCCAATTGAAATGAAGAGGTATCACTATTTCATCCTAAGAACCAATATTAATTCG
65 CAGTTATTACTCCAATAGAAACAAAGAGATATCACTATTTCATCCTAAGAACCAATATTAATTCG
36200 AGA
130 AGA
* * *
36203 -GAAAACGACAATATCAAATTATTTCCAATCGAGAATAAATGACCTCTCATACCTTAAAATAGTC
1 TGAAAACGATAATATCTAATTATTTCCAATCGAGAATAAATGACCTCTCATACCTTAAAACAGTC
* *
36267 ATTTATCACTC
66 AGTTATTACTC
36278 ATAGCGAAAT
Statistics
Matches: 174, Mismatches: 29, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
130 2 0.01
131 166 0.95
132 6 0.03
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.31
Consensus pattern (132 bp):
TGAAAACGATAATATCTAATTATTTCCAATCGAGAATAAATGACCTCTCATACCTTAAAACAGTC
AGTTATTACTCCAATAGAAACAAAGAGATATCACTATTTCATCCTAAGAACCAATATTAATTCGA
GA
Found at i:37651 original size:20 final size:20
Alignment explanation
Indices: 37626--37675 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
37616 GGCTAAAACT
37626 CCCTAAAAACTCTATAAAAG
1 CCCTAAAAACTCTATAAAAG
37646 CCCTAAAAACTCTATAAAAG
1 CCCTAAAAACTCTATAAAAG
*
37666 CCCCAAAAAC
1 CCCTAAAAAC
37676 ACGCCCCGAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.50, C:0.30, G:0.04, T:0.16
Consensus pattern (20 bp):
CCCTAAAAACTCTATAAAAG
Found at i:38819 original size:134 final size:134
Alignment explanation
Indices: 38536--38933 Score: 397
Period size: 134 Copynumber: 3.0 Consensus size: 134
38526 ATTGAGGTGG
* * * * *
38536 ACTTGTTCCACTGATACTCAGGGAAAATCAAATCTTGAAAGAGAGAGATATATT-CCGCTTCTT-
1 ACTTGTTCCACAGTTACTCAGGGAATATCAAATCTTGAAAGAGAGGGATATGTTACC-CTTCTTC
* * * * ** * ** * * * *
38599 TTTAGGGAAAATAATATTTGGGGACATTGATTTATTTTACTGTT-CTTTAGGGAAGATTGAATCG
65 TTGAGGGAAAATCAGATATGGGGATGTTGATTCATTCCATTGTTAC-TCAAGGAAGATTGAATCA
* *
38663 AGGCAG
129 AGTCAA
* * * * * * **
38669 ACCTATTCCACTGTTACTCAGGGAATCTCAAATCTTGAAAGATATGGATATGTTATGCTTCTTCT
1 ACTTGTTCCACAGTTACTCAGGGAATATCAAATCTTGAAAGAGAGGGATATGTTACCCTTCTTCT
** * *
38734 TGAGGGAAAATTGGATCTGGGGATGTTGATTCATTCCATTGTTACTCAAGGAATATTGAATCAAG
66 TGAGGGAAAATCAGATATGGGGATGTTGATTCATTCCATTGTTACTCAAGGAAGATTGAATCAAG
38799 TCAA
131 TCAA
* * * * *
38803 ACTTGTTCCACAGTTACTTAGGGAATATCAAATCTTGAAAGGGAGGGATTTGTTCCCCTTCTTTT
1 ACTTGTTCCACAGTTACTCAGGGAATATCAAATCTTGAAAGAGAGGGATATGTTACCCTTCTTCT
* * *
38868 TTAGGGAAAATCATATATGGGGATGTTGATTCATTCCATTGTTACTCAGGGAAGATTGAATCAAG
66 TGAGGGAAAATCAGATATGGGGATGTTGATTCATTCCATTGTTACTCAAGGAAGATTGAATCAAG
38933 T
131 T
38934 TCGATTTGCT
Statistics
Matches: 214, Mismatches: 48, Indels: 5
0.80 0.18 0.02
Matches are distributed among these distances:
133 51 0.24
134 162 0.76
135 1 0.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.34
Consensus pattern (134 bp):
ACTTGTTCCACAGTTACTCAGGGAATATCAAATCTTGAAAGAGAGGGATATGTTACCCTTCTTCT
TGAGGGAAAATCAGATATGGGGATGTTGATTCATTCCATTGTTACTCAAGGAAGATTGAATCAAG
TCAA
Found at i:39548 original size:59 final size:59
Alignment explanation
Indices: 39456--39572 Score: 180
Period size: 59 Copynumber: 2.0 Consensus size: 59
39446 TTGTGCAAAG
** * *
39456 GGTCGATCCCTTTTATTTTCCAGAAAAATGATCGATCCGTTTGTAAAAAGGATCGATCT
1 GGTCGATCCCTTGCATTTTCCAGAAAAATGATCGATCCCTTTGCAAAAAGGATCGATCT
* *
39515 GGTCGATCCCTTGCATTTTCTAGAAAAATGATCGATCCCTTTGCAAAAAGGATTGATC
1 GGTCGATCCCTTGCATTTTCCAGAAAAATGATCGATCCCTTTGCAAAAAGGATCGATC
39573 CATTTTTCAA
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
59 52 1.00
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (59 bp):
GGTCGATCCCTTGCATTTTCCAGAAAAATGATCGATCCCTTTGCAAAAAGGATCGATCT
Found at i:45846 original size:81 final size:81
Alignment explanation
Indices: 45753--45926 Score: 258
Period size: 81 Copynumber: 2.1 Consensus size: 81
45743 TTGTTAGACA
* *
45753 TTTAGTCTTTTACCCAAAGTTATTTAACCTTTCATCTAACTGGCAAGATTGACACCTTTCTGCCA
1 TTTAGTCTTTTACCCAAAGGTATTTAACATTTCATCTAACTGGCAAGATTGACACCTTTCTGCCA
*
45818 AAGGCACAGTTAGGCT
66 AAGGCACAATTAGGCT
* * * * * *
45834 TTTAGTGTTTTACTCGAAGGTATTTAACATTTCATCTAATTGGCATGATTGAGACCTTTCTGCCA
1 TTTAGTCTTTTACCCAAAGGTATTTAACATTTCATCTAACTGGCAAGATTGACACCTTTCTGCCA
45899 AAGGCACAATTAGGCT
66 AAGGCACAATTAGGCT
*
45915 TTTAATCTTTTA
1 TTTAGTCTTTTA
45927 GTTTAGAACA
Statistics
Matches: 82, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 82 1.00
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.38
Consensus pattern (81 bp):
TTTAGTCTTTTACCCAAAGGTATTTAACATTTCATCTAACTGGCAAGATTGACACCTTTCTGCCA
AAGGCACAATTAGGCT
Found at i:46346 original size:46 final size:46
Alignment explanation
Indices: 46258--46347 Score: 117
Period size: 46 Copynumber: 2.0 Consensus size: 46
46248 TTATTCGTTA
* * *
46258 ATTTCAGTTATGACATCCTTTCTTGCCTTAATGCATCATTTCATGT
1 ATTTCAGTTATGACATCCTTTCATACCTTAATACATCATTTCATGT
* * * *
46304 ATTTCATTTATGGCATCCTTTCATACCTTAATATATCCTTTCAT
1 ATTTCAGTTATGACATCCTTTCATACCTTAATACATCATTTCAT
46348 TTATCTTATT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.23, C:0.22, G:0.08, T:0.47
Consensus pattern (46 bp):
ATTTCAGTTATGACATCCTTTCATACCTTAATACATCATTTCATGT
Found at i:47969 original size:2 final size:2
Alignment explanation
Indices: 47962--48052 Score: 182
Period size: 2 Copynumber: 45.5 Consensus size: 2
47952 CCAGAAAAGC
47962 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
48004 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
48046 TA TA TA T
1 TA TA TA T
48053 GACATTATTT
Statistics
Matches: 89, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 89 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:50071 original size:2 final size:2
Alignment explanation
Indices: 50064--50094 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
50054 TATGCACTGT
*
50064 TA TA TA TA TA TA TA CA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
50095 TCATTTATGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:50364 original size:81 final size:81
Alignment explanation
Indices: 50240--50495 Score: 431
Period size: 81 Copynumber: 3.1 Consensus size: 81
50230 CCGTTAGACA
* * *
50240 TTTAGTCTTTTAACCCAAAGGTATTTAGCCTTTCATCTAACTGGCATGATTGACACCTTTCTACC
1 TTTAGTCTTTT-ACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTTCTGCC
*
50305 AAAGGTACAGTTAGGCT
65 AAAGGCACAGTTAGGCT
*
50322 TTTAGTCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACATCTTTCTGCCA
1 TTTAGTCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTTCTGCCA
50387 AAGGCACAGTTAGGCT
66 AAGGCACAGTTAGGCT
*
50403 TTTAGTCTTTTACTCAAAGGTATTTAACCATTCATCTAACTGGCATGATTGACACCTTTCTGCCA
1 TTTAGTCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTTCTGCCA
*
50468 AAGGCACAATTAGGCT
66 AAGGCACAGTTAGGCT
*
50484 TTTAATCTTTTA
1 TTTAGTCTTTTA
50496 TTTTAGAATA
Statistics
Matches: 165, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
81 154 0.93
82 11 0.07
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (81 bp):
TTTAGTCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTTCTGCCA
AAGGCACAGTTAGGCT
Found at i:50483 original size:162 final size:163
Alignment explanation
Indices: 50189--50495 Score: 447
Period size: 162 Copynumber: 1.9 Consensus size: 163
50179 CAATTAATCC
* * * * *
50189 TTCATCCAACTTGGATTATTGGCATCTTTCTTCCAAATACACCGTTAGACATTTAGTCTTTTAAC
1 TTCATCCAACTTGGATGATTGACATCTTTCTGCCAAAGACACAGTTAGACATTTAGTCTTTTAAC
* * * *
50254 CCAAAGGTATTTAGCCTTTCATCTAACTGGCATGATTGACACCTTTCTACCAAAGGTACAGTTAG
66 CCAAAGGTATTTAACCATTCATCTAACTGGCATGATTGACACCTTTCTACCAAAGGCACAATTAG
*
50319 GCTTTTAGTCTTTTACTCAAAGGTATTTAACCT
131 GCTTTTAATCTTTTACTCAAAGGTATTTAACCT
* * * *
50352 TTCATCTAAC-TGGCATGATTGACATCTTTCTGCCAAAGGCACAGTTAGGCTTTTAGTCTTTT-A
1 TTCATCCAACTTGG-ATGATTGACATCTTTCTGCCAAAGACACAGTTAGACATTTAGTCTTTTAA
* *
50415 CTCAAAGGTATTTAACCATTCATCTAACTGGCATGATTGACACCTTTCTGCCAAAGGCACAATTA
65 CCCAAAGGTATTTAACCATTCATCTAACTGGCATGATTGACACCTTTCTACCAAAGGCACAATTA
50480 GGCTTTTAATCTTTTA
130 GGCTTTTAATCTTTTA
50496 TTTTAGAATA
Statistics
Matches: 127, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
162 78 0.61
163 49 0.39
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (163 bp):
TTCATCCAACTTGGATGATTGACATCTTTCTGCCAAAGACACAGTTAGACATTTAGTCTTTTAAC
CCAAAGGTATTTAACCATTCATCTAACTGGCATGATTGACACCTTTCTACCAAAGGCACAATTAG
GCTTTTAATCTTTTACTCAAAGGTATTTAACCT
Found at i:50686 original size:55 final size:55
Alignment explanation
Indices: 50627--50735 Score: 130
Period size: 55 Copynumber: 2.0 Consensus size: 55
50617 TACATGGTTA
*
50627 CACACCCACTACCAATACA-AAAATTCATAAACTTATTATGAATTTCTTAGTTTTG
1 CACACACACTACCAATA-AGAAAATTCATAAACTTATTATGAATTTCTTAGTTTTG
* * * * * * *
50682 CACACATATTGCCCATAAGGAATTTCATAACCTTATTATGAATTTCTTAGTTTT
1 CACACACACTACCAATAAGAAAATTCATAAACTTATTATGAATTTCTTAGTTTT
50736 TGAAATAATT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
54 1 0.02
55 44 0.98
ACGTcount: A:0.35, C:0.20, G:0.07, T:0.38
Consensus pattern (55 bp):
CACACACACTACCAATAAGAAAATTCATAAACTTATTATGAATTTCTTAGTTTTG
Found at i:50947 original size:46 final size:46
Alignment explanation
Indices: 50875--50992 Score: 200
Period size: 46 Copynumber: 2.6 Consensus size: 46
50865 TTATTCGTTA
50875 ATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGC
1 ATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGC
* * *
50921 ATTTCATTTATGGTATCCTTTTATGCCTTAATGCATCCTTTCATGC
1 ATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGC
*
50967 ATTTCATTTATTGCATCCTTTCATGC
1 ATTTCATTTATGGCATCCTTTCATGC
50993 ATTTCATTTA
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 66 1.00
ACGTcount: A:0.20, C:0.23, G:0.10, T:0.47
Consensus pattern (46 bp):
ATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGC
Found at i:50993 original size:72 final size:71
Alignment explanation
Indices: 50905--51064 Score: 257
Period size: 72 Copynumber: 2.2 Consensus size: 71
50895 TCATGCCTTA
** *
50905 ATGCATCATTTCATGCATTTCATTTATGGTATCCTTTTATGCCTTAATGCATCCTTTCATGCATT
1 ATGCATCATTTCATGCATTTCATTTATGACATCCTTTCATGCCTTAATGCATCCTTTCATGCATT
50970 TCATTT
66 TCATTT
*
50976 ATTGCATCCTTTCATGCATTTCATTTATGACATCCTTTCATGCCTTAATGCATCCTTTCATGCAT
1 A-TGCATCATTTCATGCATTTCATTTATGACATCCTTTCATGCCTTAATGCATCCTTTCATGCAT
51041 TTCATTT
65 TTCATTT
*
51048 ATGACATCTTTTCATGC
1 ATG-CATCATTTCATGC
51065 CTTAATGCAT
Statistics
Matches: 82, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
71 3 0.04
72 79 0.96
ACGTcount: A:0.21, C:0.23, G:0.09, T:0.46
Consensus pattern (71 bp):
ATGCATCATTTCATGCATTTCATTTATGACATCCTTTCATGCCTTAATGCATCCTTTCATGCATT
TCATTT
Found at i:51083 original size:118 final size:118
Alignment explanation
Indices: 50875--51110 Score: 393
Period size: 118 Copynumber: 2.0 Consensus size: 118
50865 TTATTCGTTA
* **
50875 ATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTCATTTATGGTATCCT
1 ATTTCATTTATGACATCCTTTCATGCCTTAATGCATCATTTCATGCATTTCATTTATGACATCCT
* * *
50940 TTTATGCCTTAATGCATCCTTTCATGCATTTCATTTATTGCATCCTTTCATGC
66 TTTATGCCTTAATGCATCCTTTCATGCATTTCATTTATGGAACCCTTTCATGC
*
50993 ATTTCATTTATGACATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTCATTTATGACAT-CT
1 ATTTCATTTATGACATCCTTTCATGCCTTAATGCATCATTTCATGCATTTCATTTATGACATCCT
51057 TTTCATGCCTTAATGCATCCTTTCATGCATTTCATTTATGGAACCCTTTCATGC
66 TTT-ATGCCTTAATGCATCCTTTCATGCATTTCATTTATGGAACCCTTTCATGC
51111 CTTAATGCAT
Statistics
Matches: 110, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
117 5 0.05
118 105 0.95
ACGTcount: A:0.21, C:0.24, G:0.10, T:0.45
Consensus pattern (118 bp):
ATTTCATTTATGACATCCTTTCATGCCTTAATGCATCATTTCATGCATTTCATTTATGACATCCT
TTTATGCCTTAATGCATCCTTTCATGCATTTCATTTATGGAACCCTTTCATGC
Found at i:51144 original size:46 final size:46
Alignment explanation
Indices: 50978--51142 Score: 287
Period size: 46 Copynumber: 3.6 Consensus size: 46
50968 TTTCATTTAT
50978 TGCATCCTTTCATGCATTTCATTTATGACATCCTTTCATGCCTTAA
1 TGCATCCTTTCATGCATTTCATTTATGACATCCTTTCATGCCTTAA
*
51024 TGCATCCTTTCATGCATTTCATTTATGACATCTTTTCATGCCTTAA
1 TGCATCCTTTCATGCATTTCATTTATGACATCCTTTCATGCCTTAA
*
51070 TGCATCCTTTCATGCATTTCATTTATGGA-ACCCTTTCATGCCTTAA
1 TGCATCCTTTCATGCATTTCATTTAT-GACATCCTTTCATGCCTTAA
*
51116 TGCATCATTTCATGCATTTCATTTATG
1 TGCATCCTTTCATGCATTTCATTTATG
51143 GATTCATTTT
Statistics
Matches: 114, Mismatches: 4, Indels: 3
0.94 0.03 0.02
Matches are distributed among these distances:
45 1 0.01
46 111 0.97
47 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.10, T:0.44
Consensus pattern (46 bp):
TGCATCCTTTCATGCATTTCATTTATGACATCCTTTCATGCCTTAA
Found at i:51592 original size:22 final size:22
Alignment explanation
Indices: 51566--51643 Score: 56
Period size: 22 Copynumber: 3.6 Consensus size: 22
51556 TACCCCTACC
51566 ATGGTATCGATACTTCTATACT
1 ATGGTATCGATACTTCTATACT
*
51588 ATGGTA-CTGATACCTT-TCT-CT
1 ATGGTATC-GATA-CTTCTATACT
* * *
51609 CT-GTATCGATACTACTACACT
1 ATGGTATCGATACTTCTATACT
* *
51630 GTGGTACCGATACT
1 ATGGTATCGATACT
51644 CTCTTTCCGT
Statistics
Matches: 43, Mismatches: 7, Indels: 12
0.69 0.11 0.19
Matches are distributed among these distances:
19 2 0.05
20 8 0.19
21 8 0.19
22 22 0.51
23 3 0.07
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.37
Consensus pattern (22 bp):
ATGGTATCGATACTTCTATACT
Found at i:53997 original size:16 final size:16
Alignment explanation
Indices: 53972--54008 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
53962 TGCTTATCTC
* *
53972 TATGTTTTGATGGTAG
1 TATGTGTTGATGCTAG
53988 TATGTGTTGATGCTAG
1 TATGTGTTGATGCTAG
54004 TATGT
1 TATGT
54009 ATTTGCGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.19, C:0.03, G:0.30, T:0.49
Consensus pattern (16 bp):
TATGTGTTGATGCTAG
Found at i:56345 original size:16 final size:18
Alignment explanation
Indices: 56318--56355 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
56308 ACCGTATTGA
*
56318 TTTTCAACTTTACAAT-C
1 TTTTCAACTTTAAAATGC
56335 TTTTC-ACTTTAAAATGC
1 TTTTCAACTTTAAAATGC
56352 TTTT
1 TTTT
56356 ATTATTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.26, C:0.18, G:0.03, T:0.53
Consensus pattern (18 bp):
TTTTCAACTTTAAAATGC
Found at i:60317 original size:18 final size:18
Alignment explanation
Indices: 60302--60342 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
60292 TTACTTTTTA
60302 CATTTTGCTCTTTTTTCT
1 CATTTTGCTCTTTTTTCT
* *
60320 CTTTTTTCTCTTTTTTC-
1 CATTTTGCTCTTTTTTCT
60337 CATTTT
1 CATTTT
60343 TTATGAAAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.05, C:0.22, G:0.02, T:0.71
Consensus pattern (18 bp):
CATTTTGCTCTTTTTTCT
Found at i:60344 original size:9 final size:9
Alignment explanation
Indices: 60304--60336 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
60294 ACTTTTTACA
*
60304 TTTTGCTCT
1 TTTTTCTCT
60313 TTTTTCTCT
1 TTTTTCTCT
60322 TTTTTCTCT
1 TTTTTCTCT
60331 TTTTTC
1 TTTTTC
60337 CATTTTTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.00, C:0.21, G:0.03, T:0.76
Consensus pattern (9 bp):
TTTTTCTCT
Found at i:60818 original size:17 final size:17
Alignment explanation
Indices: 60793--60826 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
60783 CTTAGCCAAA
*
60793 ATTAGGGTAGTGGTGAT
1 ATTAAGGTAGTGGTGAT
60810 ATTAAGGTAGTGGTGAT
1 ATTAAGGTAGTGGTGAT
60827 GATGGATGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.38, T:0.35
Consensus pattern (17 bp):
ATTAAGGTAGTGGTGAT
Found at i:60864 original size:23 final size:24
Alignment explanation
Indices: 60823--60869 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
60813 AAGGTAGTGG
60823 TGATGATGGATGATAATGGTGATT
1 TGATGATGGATGATAATGGTGATT
*
60847 TGATGAT-GATGATGATGGTGATT
1 TGATGATGGATGATAATGGTGATT
60870 GAGAGATAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 15 0.68
24 7 0.32
ACGTcount: A:0.28, C:0.00, G:0.34, T:0.38
Consensus pattern (24 bp):
TGATGATGGATGATAATGGTGATT
Found at i:61415 original size:25 final size:25
Alignment explanation
Indices: 61379--61435 Score: 105
Period size: 25 Copynumber: 2.3 Consensus size: 25
61369 TAGTTCCTGA
61379 CATTGGATTGACGCATTCTAAGTAC
1 CATTGGATTGACGCATTCTAAGTAC
*
61404 CGTTGGATTGACGCATTCTAAGTAC
1 CATTGGATTGACGCATTCTAAGTAC
61429 CATTGGA
1 CATTGGA
61436 AAGCTAATAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (25 bp):
CATTGGATTGACGCATTCTAAGTAC
Found at i:62449 original size:7 final size:7
Alignment explanation
Indices: 62437--62478 Score: 84
Period size: 7 Copynumber: 6.0 Consensus size: 7
62427 ACTTTCGGTC
62437 AATCGAA
1 AATCGAA
62444 AATCGAA
1 AATCGAA
62451 AATCGAA
1 AATCGAA
62458 AATCGAA
1 AATCGAA
62465 AATCGAA
1 AATCGAA
62472 AATCGAA
1 AATCGAA
62479 TAGAAGCGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 35 1.00
ACGTcount: A:0.57, C:0.14, G:0.14, T:0.14
Consensus pattern (7 bp):
AATCGAA
Done.