genome.fa.s4881.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004881.1 Hibiscus syriacus cultivar Beakdansim tig00010996_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101725

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4951--4999	19	2.6	19	90	0	71	55	2	2	40	1.23
4951--5012	19	3.1	21	80	15	69	51	1	4	41	1.33
5063--5105	22	1.9	23	90	4	70	46	2	9	41	1.48
5070--5118	24	2.0	26	84	8	66	46	2	8	42	1.45
5086--5198	38	2.8	41	82	10	144	45	4	4	46	1.43
5018--5161	62	2.2	64	85	9	186	42	3	7	46	1.49
4982--5257	144	1.9	140	80	14	314	40	4	7	47	1.52
5282--5315	16	2.1	16	100	0	68	35	5	5	52	1.50
7546--7909	44	8.2	44	91	1	532	24	22	12	41	1.87
7546--7909	89	4.1	88	88	2	532	24	22	12	41	1.87
7738--7816	27	3.3	27	61	34	70	24	24	11	40	1.87
7544--7909	133	2.8	133	90	1	556	24	22	12	41	1.87
14632--15074	44	10.2	44	91	3	693	24	23	12	39	1.89
14632--15051	213	2.0	213	92	0	707	24	23	12	39	1.89
21002--21045	20	2.1	21	87	4	63	25	13	2	59	1.46
24063--24111	21	2.3	21	92	0	80	22	16	32	28	1.95
25216--25325	51	2.2	51	96	1	204	36	10	19	33	1.86
26301--26411	31	3.6	31	80	4	127	42	2	15	39	1.61
32564--32862	85	3.5	85	93	1	485	29	21	18	30	1.97
37744--37784	21	1.9	22	85	5	57	29	4	58	7	1.46
41972--42001	10	3.0	10	100	0	60	20	30	50	0	1.49
42175--42379	109	1.9	110	81	7	256	19	14	17	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42662--42696	11	3.2	11	87	0	52	17	2	5	74	1.14
42702--42751	4	13.2	4	83	12	70	22	0	2	76	0.89
42714--42767	26	2.1	26	82	6	65	25	0	5	68	1.11
44762--44874	42	2.7	41	70	6	93	28	20	20	30	1.97
44365--44985	278	2.2	276	88	1	902	30	14	19	35	1.92
44958--45009	24	2.1	25	92	3	88	38	11	7	42	1.70
45062--45175	42	2.7	41	74	6	104	24	20	22	32	1.98
44722--45493	300	2.6	298	83	4	916	29	16	19	34	1.94
47430--47471	7	6.1	7	77	5	50	14	2	2	80	0.90
57722--57999	45	6.2	45	83	3	310	29	19	9	40	1.84
57726--57999	135	2.0	134	84	5	356	29	20	9	40	1.84
58510--58565	22	2.6	21	78	13	69	33	17	23	25	1.96
58970--59133	79	2.1	79	85	4	215	38	9	23	28	1.86
59095--59313	45	4.9	45	84	2	271	40	8	20	30	1.82
59058--59313	90	2.8	90	84	3	302	39	8	21	30	1.84
59098--59350	135	1.9	134	83	6	332	41	7	19	31	1.80
65352--65400	19	2.7	18	84	9	64	24	16	32	26	1.96
65243--65402	65	2.5	65	87	3	225	26	16	26	30	1.96
66066--66109	18	2.5	17	82	7	61	54	27	0	18	1.44
66077--66113	18	2.0	19	94	5	67	59	27	0	13	1.35
71738--71797	21	3.0	19	75	20	59	28	13	6	51	1.66
71837--71878	21	2.0	21	86	9	59	35	11	2	50	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73804--73960	62	2.5	63	80	10	178	26	15	25	32	1.95
73911--73946	19	1.9	19	94	5	65	25	16	33	25	1.96
74402--74451	24	2.1	23	88	3	73	28	20	24	28	1.99
79569--79630	33	1.9	32	87	9	90	35	8	16	40	1.78
85207--85254	21	2.3	21	96	0	87	41	12	18	27	1.86
89734--89781	21	2.3	21	96	0	87	41	12	18	27	1.86
92284--92334	26	2.0	26	84	0	66	54	3	11	29	1.54
93590--93683	3	31.7	3	79	14	106	63	1	1	34	1.08
94042--94739	123	5.7	123	93	1	1147	25	18	14	40	1.90
95087--95193	22	4.9	22	86	2	135	34	13	14	37	1.85
95811--95848	18	2.1	18	100	0	76	52	5	10	31	1.58
96193--96238	22	2.1	22	84	8	58	10	10	2	76	1.12
96208--96266	12	4.6	14	78	16	56	3	13	3	79	0.98
96208--96266	26	2.3	26	82	8	68	3	13	3	79	0.98

Tables:   1

The End!